Input parameters:

  Query = ENSMUSP00000066613 (Len=466)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000066613, Len=466):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFNKTWQEHAK 80  
WD40-rpts                                                                                      

Query       81 TRAKPEDFTYKEFPMEFEFRAHPWYISRHGLTRNGQGKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQ 160 
WD40-rpts                  (__________________WD 1_________________)   (_________________WD 2__

Query      161 IAVTIDMQSTIKLWDCHNKEVLASKTGLFFSCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELY 240 
WD40-rpts      ______________)   (__________________WD 3_________________)   (_________________

Query      241 FSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLEVPLIRKVFWTPRREDRITLMSLILPENITKFDTFDMKL 320 
WD40-rpts      WD 4________________)                      (_________________WD 5_______________

Query      321 EGIGNKVTIQGYLTASFSLAEDEGTPDHFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCD 400 
WD40-rpts      _)   (___________________WD 6___________________)  (_________________WD 7_______

Query      401 AGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLNVCS 466 
WD40-rpts      _________)                                                        

7 WD40-repeats found in QUERY=ENSMUSP00000066613 (Len=466):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    93-133      5.06  323.56  0.00271       17.5%     43.80
  WD 2:  Seg  6   137-175      8.47  464.37  3.4e-05       22.5%     54.07
  WD 3:  Seg 10   179-219      7.01  404.19  0.00022       20.0%     53.98
  WD 4:  Seg 14   223-261      7.02  404.69  0.00022       10.0%     53.66
  WD 5:  Seg 19   284-322      4.40  296.52  0.00627        5.0%     40.01
  WD 6:  Seg 23   326-369      5.24  331.02  0.00215       12.5%     32.08
  WD 7:  Seg 27   372-410      7.14  409.65  0.00019       15.0%     39.88

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   93-133    FPMEFEFRAHPWYISRHG--LTRN-----GQGKSAVCMTSMNRISTWD
   WD 2  137-175    GAMTWESPKQPSYIVWMT--TLPE-----M--QIAVTIDMQSTIKLWD
   WD 3  179-219    KEVLASKTGLFFSCKLLQSEFTKD-----G--PIVLVGDACGNLYIFR
   WD 4  223-261    LHLISKVNVFPYSIDELY--FSPQ-----K--KWVFLIGHRLNDLTKV
   WD 5  284-322    PLIRKVFWTPRREDRITL--MSLI-----L--PENITKFDTFDMKLEG
   WD 6  326-369    KVTIQGYLTASFSLAEDE--GTPDHFGVSD--KDVIVCSTRFSLLLFD
   WD 7  372-410    GLRLQTFHYCPEEIWRLW--VDPV-----H--VIVTCDAGSLDIYAWE

   WD40 Template    GECLRTLSGHTSGVTSVS--FSPD-----G--KRLVSGSEDGTIKVWD