WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000065643 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000065643 (Len=1977) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000065643, Len=1977): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MAARSAPSCHLRLEWVYGYRGHQCRNNLYYTAAKEIVYFVAGVGVVYSPREHRQKFFRGHSDDIISLALHPERVLVATGQ 80
WD40-rpts (___________________WD 1_________
Query 81 VGKEPYICVWDSYTVQTVSVLKDVHTHGIACLAFDLDGQRLVSVGLDSKNAVCVWDWKRGRMLSMAPGHTDRIFDISWDL 160
WD40-rpts __________) (__________________WD 2__________________) (_________________WD
Query 161 YQPNKLVSCGVKHIKFWSLCGNALTPKRGVFGKTGDLQTILCLACARDELTYSGALNGDIYVWKGINLIRTIQGAHTAGI 240
WD40-rpts 3________________) (________________WD 4________________)(_______________
Query 241 FSMNSCEEGFATGGRDGCIRLWDLTFKPITVIDLRETEQGYKGLSVRSVCWRGDHILVGTQDSEIFEIVVHERNKPFLIM 320
WD40-rpts __WD 5________________) (______
Query 321 QGHCEGELWALAVHPTKPLAVTGSDDRSVRIWSLVDHALIARCNMEEPIRCAAVNVDGIHLALGMKDGSFTVLRVRDMTE 400
WD40-rpts ___________WD 6_________________) (_________________WD 7________________) (__
Query 401 VVHIKDRKEAIHELKYSPDGAYLAVGCNDSSVDIYGVAQRYKKVGECVGSLSFITHLDWSSDSRYLQTNDGSGKRLLYKM 480
WD40-rpts _______________WD 8________________) (_________________WD 9________________)
Query 481 PGGKEVTSKEEIKGMHWASWTCVAGLEVNGIWPKYSDINDINSVDGNYVGQVLVTADDYGVVKLFRYPCLRKGAKFRKYI 560
WD40-rpts (_________________WD10_________________) (_______
Query 561 GHSAHVTNVRWSHDYQWVISIGGADHSVFQWKFIPERKLKDALHIAPQESLAESNSDESDSDLSDVPELDSEIEQETQLT 640
WD40-rpts __________WD11_________________) (_____________WD12_____________)(______________
Query 641 YHRQVYKEDLPQLKEQCKEKQKSATSKRRERTPGTSIRLHFIHGYRGYDCRSNLFYTQIGEIVYHVAAVGVIYNRQQNTQ 720
WD40-rpts ______WD13___________________) (___
Query 721 RFYLGHDDDILCLAIHPLKDYVATGQVGRDPSIHVWDTETIKPLSILKGYHQYGICAVDFSADGKRLASVGIDDSHTIVL 800
WD40-rpts _______________WD14_________________) (__________________WD15_________________
Query 801 WDWKKGEKLSVTRGSKDKIFVVKMNPYVPDKLITAGIKHMKFWRRAGGGLIGKKGYVGTLGKNDTMMCAVYGWTEEMAFS 880
WD40-rpts _) (_________________WD16________________) (________________WD17_____
Query 881 GTSTGDVCIWRDVFLVKTVKAHDGPVFSMHALEKGFVTGGKDGMVALWDDSFERCLKTYAIKRADLAPGSKGLLLEDNPS 960
WD40-rpts __________)(________________WD18________________) (__________________
Query 961 IRAISLGHGHILVGTKNGEILEVDKSGPITLLVQGHMEGEVWGLATHPYLPICATVSDDKTLRIWDLSPSHCMLAVRKLK 1040
WD40-rpts _WD19__________________) (_________________WD20________________) (__________
Query 1041 KGGRCCCFSPDGKALAVGLNDGSFLMANADTLEDLVSFHHRKDIISDIRFSPGSGKYLAVASHDSFVDIYNVTSSKRVGV 1120
WD40-rpts _______WD21________________) (_________________WD22_________________) (_____
Query 1121 CKGATSYITHIDWDSRGKLLQVNTGAKEQLFFEAPRGKRQTIPSVEVEKISWATWTSVLGLCCEGIWPVIGEVTEVTASC 1200
WD40-rpts ____________WD23________________) (_________________W
Query 1201 LTSDKMVLATGDDLGFVKLFRYPAKGKFGKFKKYVAHSTHVTNVRWTYDDSMLVTLGGADMSLMVWTNEVESHREKKYCD 1280
WD40-rpts D24_________________) (_________________WD25_________________) (__________
Query 1281 SEESDIDSEEDGGYDSDVTRENEISYTIRALSTNIRPMFGVKPHLQQKEPSVDERQGVVRGSRPPVSRAPPQPEKLQSNN 1360
WD40-rpts _______WD26________________) (_____________________WD27____________________)
Query 1361 VGKKKRPIEDLVLELAFGYRGRDCRNNVHYLNDGDDIIYHTASIGILHNVATGTQSFYQEHNDDILCLTVNQHPKFINIV 1440
WD40-rpts (________________
Query 1441 ATGQVGDSADMSATAPSVHIWDAVNKQTLSILRCSHSKGVCSVSFSATGKLLLSVGLDPEHTVTIWRWQEGAKIASRGGH 1520
WD40-rpts _WD28________________)(____________________WD29___________________) (_________
Query 1521 NQRIFVAEFRPDSDTQFVSVGIKHVKFWTLAGRALLSKKGLLSSLEDARMQTMLAVAFGANNLTFTGTISGDVCVWKDHI 1600
WD40-rpts ________WD30________________) (________________WD31________________) (
Query 1601 LCRVVARAHNGPVFAMYTTLRDGLIVTGGKERPSKEGGAVKLWDQELRRCRAFRLETGQVTDCVRSVCRGKGKILVGTRN 1680
WD40-rpts ____________________WD32___________________)(___________________WD33____________
Query 1681 SEIIEVGEKNAACNILVNGHVDGPIWGLATHPSRDFFLSAAEDGTVRLWDIADKKMLNKVNLGHAARTVCYSPEGDMVAI 1760
WD40-rpts _______) (_________________WD34_________________)(__________________WD35_______
Query 1761 GMKNGEFIILLVSSLKIWGKKRDRRCAIHDIRFSPDSRYLAVGSSENSVDFYDLTLGPTLNRISYCKDIPSFVIQMDFSA 1840
WD40-rpts __________) (_________________WD36________________) (_______________WD
Query 1841 DSRHLQVSSGCYKRHVYEVPSGKHLVDHAAIDRITWATWTSILGDEVMGIWSRHAEKADVTCACVSHSGISLVTGDDFGM 1920
WD40-rpts 37_______________) (___________________WD38_______________
Query 1921 VKLYDFPCPEKFAKHKRFLGHSPHVTNIRFTSGDRHVVSAGGDDCSLFVWKCVHMPH 1977
WD40-rpts ____) (_________________WD39_________________)
 39 WD40-repeats found in QUERY=ENSMUSP00000065643 (Len=1977): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 4 48-91 6.40 379.15 0.00048 22.5% 55.18 WD 2: Seg 8 95-136 6.41 379.25 0.00048 37.5% 56.80 WD 3: Seg 12 140-178 7.28 415.37 0.00016 22.5% 56.61 WD 4: Seg 16 187-224 4.96 319.69 0.00306 20.0% 47.30 WD 5: Seg 20 225-263 6.90 399.81 0.00025 32.5% 49.90 WD 6: Seg 28 314-353 7.12 408.88 0.00019 22.5% 57.37 WD 7: Seg 32 356-394 6.66 389.57 0.00035 20.0% 56.59 WD 8: Seg 36 398-436 7.89 440.49 7.2e-05 17.5% 58.95 WD 9: Seg 40 441-479 7.13 409.28 0.00019 17.5% 56.06 WD10: Seg 46 507-546 7.94 442.51 6.8e-05 17.5% 40.82 WD11: Seg 49 553-592 7.07 406.65 0.00021 32.5% 50.63 WD12: Seg 53 594-625 3.77 270.37 0.01406 10.0% 17.64 WD13: Seg 55 626-670 4.01 280.29 0.01035 12.5% 11.86 WD14: Seg 60 717-757 6.57 385.94 0.00039 25.0% 56.95 WD15: Seg 64 761-802 6.72 392.36 0.00032 47.5% 55.95 WD16: Seg 68 806-844 6.65 389.39 0.00035 20.0% 56.67 WD17: Seg 73 855-891 6.13 367.70 0.00069 12.5% 46.00 WD18: Seg 76 892-929 7.86 439.54 7.4e-05 27.5% 53.43 WD19: Seg 81 942-984 4.17 286.75 0.00848 17.5% 32.94 WD20: Seg 84 988-1026 6.80 395.63 0.00029 20.0% 55.82 WD21: Seg 88 1030-1068 7.78 436.12 8.2e-05 30.0% 59.19 WD22: Seg 92 1072-1111 6.50 383.10 0.00043 25.0% 57.93 WD23: Seg 96 1115-1153 6.88 398.70 0.00026 17.5% 56.32 WD24: Seg102 1182-1221 8.07 448.17 5.7e-05 22.5% 50.83 WD25: Seg106 1228-1267 6.17 369.51 0.00065 27.5% 50.46 WD26: Seg110 1270-1308 5.66 348.28 0.00126 15.0% 49.94 WD27: Seg114 1312-1358 3.91 276.23 0.01173 17.5% 18.63 WD28: Seg122 1424-1462 6.94 401.49 0.00024 15.0% 51.00 WD29: Seg126 1463-1507 6.27 373.52 0.00058 37.5% 55.79 WD30: Seg130 1511-1549 7.17 410.78 0.00018 20.0% 56.10 WD31: Seg135 1560-1597 5.52 342.76 0.00150 17.5% 42.43 WD32: Seg138 1600-1644 6.07 365.46 0.00074 22.5% 51.56 WD33: Seg142 1645-1688 5.79 353.66 0.00107 20.0% 49.93 WD34: Seg146 1691-1730 7.43 421.57 0.00013 30.0% 56.73 WD35: Seg150 1731-1771 5.89 358.12 0.00093 15.0% 56.90 WD36: Seg154 1775-1813 7.73 433.90 8.8e-05 20.0% 58.17 WD37: Seg159 1823-1858 6.14 368.25 0.00068 20.0% 44.30 WD38: Seg164 1882-1925 6.44 380.69 0.00046 25.0% 50.73 WD39: Seg168 1932-1971 6.33 375.99 0.00053 27.5% 51.41Multiple sequence alignment of 39 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 48-91 SP----R-EHR-----QKF-FRG---HSDD-IISLALHP-E--------RVLVAT-GQVGKE------P--YICVWD WD 2 95-136 -V----Q---T-----VSV-LKD--VHTHG-IACLAFDL-D--------GQRLVS-VG--LD----SKN--AVCVWD WD 3 140-178 -G----R---M-----LSM-APG---HTDR-IFDISWDL-Y--------QPNKLV-SC--GV------K--HIKFWS WD 4 187-224 -K----R---G-----VFG-KTG---DLQT-ILCLACAR-D--------E-LTYS-GA--LN------G--DIYVWK WD 5 225-263 GI----N---L-----IRTIQGA---HTAG-IFSMNSCE-E--------G--FAT-GG--RD------G--CIRLWD WD 6 314-353 -N----K---P-----FLI-MQG---HCEGELWALAVHP-T--------KPLAVT-GS--DD------R--SVRIWS WD 7 356-394 -D----H---A-----LIA-RCN---MEEP-IRCAAVNV-D--------GIHLAL-GM--KD------G--SFTVLR WD 8 398-436 -M----T---E-----VVH-IKD---RKEA-IHELKYSP-D--------GAYLAV-GC--ND------S--SVDIYG WD 9 441-479 -Y----K---K-----VGE-CVG---SLSF-ITHLDWSS-D--------SRYLQT-ND--GS------G--KRLLYK WD10 507-546 EV----N---G-----IWP-KYS---DIND-INSVDGNY-V--------GQVLVT-AD--DY------G--VVKLFR WD11 553-592 -G----A---K-----FRK-YIG---HSAH-VTNVRWSH-D--------YQWVISIGG--AD------H--SVFQWK WD12 594-625 ---------------------IP---ERKL-KDALHIAP-Q--------ESLAES-NS--DE------S--DSDLSD WD13 626-670 VP----E---LDSEIEQET-QLT---YHRQ-VYKEDLPQ-L--------KEQCKE-KQ--KS------A--TSKRRE WD14 717-757 QN----T---------QRF-YLG---HDDD-ILCLAIHP-L--------KDYVAT-GQVGRD------P--SIHVWD WD15 761-802 -I----K---P-----LSI-LKG--YHQYG-ICAVDFSA-D--------GKRLAS-VG--ID------DSHTIVLWD WD16 806-844 -G----E---K-----LSV-TRG---SKDK-IFVVKMNP-Y--------VPDKLI-TA--GI------K--HMKFWR WD17 855-891 ----------G-----YVG-TLG---KNDT-MMCAVYGW-T--------EEMAFS-GT--ST------G--DVCIWR WD18 892-929 DV----F---L-----VKT-VKA---HDGP-VFSMHALE-K--------G--FVT-GG--KD------G--MVALWD WD19 942-984 KR----A---D-----LAP-GSKGLLLEDN-PSIRAISL-G--------HGHILV-GT--KN------G--EILEVD WD20 988-1026 -P----I---T-----LLV-QGH---MEGE-VWGLATHP-Y--------LPICAT-VS--DD------K--TLRIWD WD21 1030-1068 -S----H---C-----MLA-VRK---LKKG-GRCCCFSP-D--------GKALAV-GL--ND------G--SFLMAN WD22 1072-1111 -L----E---D-----LVS-FHH---RKDI-ISDIRFSPGS--------GKYLAV-AS--HD------S--FVDIYN WD23 1115-1153 -S----K---R-----VGV-CKG---ATSY-ITHIDWDS-R--------GKLLQV-NT--GA------K--EQLFFE WD24 1182-1221 CC----E---G-----IWP-VIG---EVTE-VTASCLTS-D--------KMVLAT-GD--DL------G--FVKLFR WD25 1228-1267 -F----G---K-----FKK-YVA---HSTH-VTNVRWTY-D--------DSMLVTLGG--AD------M--SLMVWT WD26 1270-1308 -V----E---S-----HRE-KKY---CDSE-ESDIDSEE-D--------GGYDSD-VT--RE------N--EISYTI WD27 1312-1358 -S----T---N-----IRP-MFG---VKPH-LQQKEPSV-DERQGVVRGSRPPVS-RA--PP------Q--PEKLQS WD28 1424-1462 -D----I---L-----CLT-VNQ---HPKF-INIVATGQ-V--------GDSADM-SA--TA------P--SVHIWD WD29 1463-1507 AV----NKQTL-----SIL-RCS---HSKG-VCSVSFSA-T--------GKLLLS-VG--LD----PEH--TVTIWR WD30 1511-1549 -G----A---K-----IAS-RGG---HNQR-IFVAEFRP-D--------SDTQFV-SV--GI------K--HVKFWT WD31 1560-1597 -G----L---L-----SSL-EDA---RMQT-MLAVAFGA-N--------NLTF-T-GT--IS------G--DVCVWK WD32 1600-1644 -I----L---C-----RVV-ARA---HNGP-VFAMYTTL-R--------DGLIVT-GG--KERPSKEGG--AVKLWD WD33 1645-1688 QELRRCR---A-----FRL-ETG---QVTD-CVRSVCRG-K--------GKILVG-TR--NS------E--IIEVGE WD34 1691-1730 -A----A---C-----NIL-VNG---HVDGPIWGLATHP-S--------RDFFLS-AA--ED------G--TVRLWD WD35 1731-1771 IA----D--KK-----MLN-KVN---LGHA-ARTVCYSP-E--------GDMVAI-GM--KN------G--EFIILL WD36 1775-1813 -L----K---I-----WGK-KRD---RRCA-IHDIRFSP-D--------SRYLAV-GS--SE------N--SVDFYD WD37 1823-1858 ----------------ISY-CKD---IPSF-VIQMDFSA-D--------SRHLQV-SS--GC------Y--KRHVYE WD38 1882-1925 ILGDEVM---G-----IWS-RHA---EKAD-VTCACVSH-S--------GISLVT-GD--DF------G--MVKLYD WD39 1932-1971 -F----A---K-----HKR-FLG---HSPH-VTNIRFTS-G--------DRHVVSAGG--DD------C--SLFVWK WD40 Template TG----E---C-----LRT-LSG---HTSG-VTSVSFSP-D--------GKRLVS-GS--ED------G--TIKVWD |
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