Input parameters:

  Query = ENSMUSP00000065198 (Len=875)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000065198, Len=875):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGKTVASLGQGTRPDPVRSFNRWKKKHSHRQHQKKERRKQLKKPEWQVEREGISRLMQNYEKINVNEITRFSDFPLSKKT 80  
WD40-rpts                                                                                      

Query       81 LKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEV 160 
WD40-rpts                              (____________________________________________WD 1_______

Query      161 LRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAII 240 
WD40-rpts      ____________________________________)                                           

Query      241 ENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHLKKKSIVFF 320 
WD40-rpts                                                                                      

Query      321 SSCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYI 400 
WD40-rpts                                                                                      

Query      401 HRAGRTARYKEDGEALLILLPSEEQGMVQQLLQKKVPVKEIKINPEKLIDVQKKLESFLAQDQDLKERAQRCFVSYIRSV 480 
WD40-rpts                                                                                      

Query      481 YLMKDKEVFNVSKLPITEYALSLGLAVAPRIRFLQKLEKQPSTELVKNPVTEAVPPRAPSLPNDEADESPAYVSEKMSVL 560 
WD40-rpts                                                                                      

Query      561 HKSGERLEETEHRLASGDGDEEQDEETEDEETEDHLGKAREPHTESVVSIEEAQKVKEVSVQFLNRDDDDEDGPDADFLT 640 
WD40-rpts                                                                                      

Query      641 VKRRDVFGLDLKENEALSKKEPSKSSVKKKLTKVAEAKKVMKRSFKVNKKITFTDEGELVQQWPQIQKCAIKDVEEEDDT 720 
WD40-rpts                                                                                      

Query      721 GGINLDKAKERLQEEDKFDKEEYRKKIKAKHRERRLKEREARREANKRQAKARDEEEAFLDWSDEDDGGFDPSTLPDPDK 800 
WD40-rpts                                                                                      

Query      801 HRSSEESESEDTNHKMSDTKKKQETRKRNNTEDDDVRPRSRHGKKAKWETVEPLDTGLSLAEDEELVLHLLKSQN 875 
WD40-rpts                                                                                 

1 WD40-repeats found in QUERY=ENSMUSP00000065198 (Len=875):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   105-197      3.58  262.65  0.01783       25.0%     40.90

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  105-197    QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCT

   WD40 Template    TGECLRTLSGHTS-----------------------GVTSVSFSPD--------------------GKRLVSGSED----------GTIKVWD