Input parameters:

  Query = ENSMUSP00000065004 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000065004, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNTTPGTVGSDPVILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEITPDRSMIAAAGYQHIRMYDLNSNNPNPIIS 80  
WD40-rpts      (___________WD 1___________)   (________________WD 2________________)(__________

Query       81 YDGVSKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGAIHIWDLKTD 160 
WD40-rpts      _________WD 3___________________)(___________________WD 4__________________)   (

Query      161 HNEQLIPEPESSITSAHIDPDASYMAAVNSAGNCYVWNLTGGIGDDVTQLIPKTKIPAHTRYALQCRFSPDSTLLATCSA 240 
WD40-rpts      _________________WD 5________________)               (_______________WD 6_______

Query      241 DQTCKIWRTSNFSLMTELSIKSSNPGESSRGWMWGCAFSGDSQYIVTASSDNLARLWCVETGEIKREYGGHQKAVVCLAF 320 
WD40-rpts      _______)          (_________________WD 7_________________)                      

Query      321 NDSVLG 326 
WD40-rpts            

7 WD40-repeats found in QUERY=ENSMUSP00000065004 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-28       5.03  322.43  0.00281       15.0%     43.95
  WD 2:  Seg  4    32-69       7.91  441.25  7.0e-05       25.0%     55.28
  WD 3:  Seg  8    70-113      9.34  500.47  1.1e-05       30.0%     57.18
  WD 4:  Seg 12   114-156      8.68  473.18  2.6e-05       20.0%     56.55
  WD 5:  Seg 16   160-198      9.03  487.76  1.7e-05       20.0%     53.19
  WD 6:  Seg 20   214-248      8.69  473.77  2.6e-05       32.5%     45.86
  WD 7:  Seg 24   259-298      9.67  514.24  7.3e-06       17.5%     38.42

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-28     -------------------MNTTPGTVGSDPVILATAGYDHTVRFWQ
   WD 2   32-69     -G----I---CTRTVQHQDSQVNALEITPDRSMIAAAG-YQHIRMYD
   WD 3   70-113    LNSNNPN---PIISYDGVSKNIASVGFHEDGRWMYTGGEDCTARIWD
   WD 4  114-156    LR----SRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGAIHIWD
   WD 5  160-198    -D----H---NEQLIPEPESSITSAHIDPDASYMAAVNSAGNCYVWN
   WD 6  214-248    T------------KIPAHTRYALQCRFSPDSTLLATCSADQTCKIWR
   WD 7  259-298    SI----K---SSNPGESSRGWMWGCAFSGDSQYIVTASSDNLARLWC

   WD40 Template    TG----E---CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD