Input parameters:

  Query = ENSMUSP00000064937 (Len=357)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000064937, Len=357):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAPSQEDPSLERHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGS 80  
WD40-rpts             (_________________WD 1_________________)   (_________________WD 2________

Query       81 RDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLI 160 
WD40-rpts      ________)   (_________________WD 3________________)   (_________________WD 4____

Query      161 VSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPS 240 
WD40-rpts      ____________)   (_________________WD 5________________)   (_________________WD 6

Query      241 GNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDYGDMKARRPPPLTS 320 
WD40-rpts      ________________)   (_________________WD 7________________)(_________________WD 

Query      321 SSGTLTVSILEQRLTLTEDRLKQCLENQQLIMQRTPP 357 
WD40-rpts      8________________)                   

8 WD40-repeats found in QUERY=ENSMUSP00000064937 (Len=357):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-47       9.93  524.97  5.2e-06       40.0%     55.32
  WD 2:  Seg  5    51-89      10.17  534.94  3.8e-06       40.0%     55.79
  WD 3:  Seg  9    93-131      9.96  526.15  5.0e-06       40.0%     55.31
  WD 4:  Seg 13   135-173     10.54  550.14  2.4e-06       42.5%     56.97
  WD 5:  Seg 17   177-215     10.14  533.64  4.0e-06       37.5%     53.88
  WD 6:  Seg 21   219-257      9.88  522.90  5.6e-06       32.5%     56.58
  WD 7:  Seg 25   261-299     10.06  530.17  4.4e-06       40.0%     55.55
  WD 8:  Seg 29   300-338      6.68  390.42  0.00034        5.0%     43.47

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-47     DPSLERHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWH
   WD 2   51-89     -QSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWV
   WD 3   93-131    -KGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKVWS
   WD 4  135-173    -QRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWD
   WD 5  177-215    -RECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD
   WD 6  219-257    -HRLLQHYQLHSAAVNALSFHPSGNYLITASSDSTLKILD
   WD 7  261-299    -GRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWK
   WD 8  300-338    SNFDI-VDYGDMKARRPPPLTSSSGTLTVSILEQRLTLTE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD