Input parameters:

  Query = ENSMUSP00000064900 (Len=1158)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000064900, Len=1158):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKLKELEKPAVQAWSPARQYPVYLATGTSAQQLDASFSTNATLEIFEIDFRDPSLDLKHKGILSVSSRFHKLIWGSFGSG 80  
WD40-rpts             (_________________WD 1_________________)                (________________

Query       81 LLENSGVIAGGGDNGTLTLYNVTHVLSSGKEPLIAQKQKHTGAVRALDFNPFQGNLLASGASDSEIFIWDLNHLSVPMTP 160 
WD40-rpts      WD 2________________)             (_______________WD 3_______________)(_________

Query      161 GPKSQNPPEDIKALSWNLQVQHILASAHPSGKAVVWDLRKNEPIIKVSSHSSRMNCSGLAWNPDIATQLVLCSEDDQLPV 240 
WD40-rpts      ____________WD 4____________________)   (____________________WD 5_______________

Query      241 IQLWDLRFASSPLKVLESHSRGILSMSWNQADAELLLSTAKDSQIFCWNLSSSEVVYKLPTQSSWCFDVQWCPQSPPVFS 320 
WD40-rpts      ____)    (_________________WD 6_________________)   (_________________WD 7______

Query      321 AVSFDGWISLCSVMGRSWEAQHMRQADKVPEQVAQASLIPPLKKPPKWMRRPAGGSFAFGGKLVTFGLPSIPVQPVAQAC 400 
WD40-rpts      ___________)                                                                    

Query      401 SRPVFISQVITESEVLTRSVVLQEALGSGNLLNYCQSKVQQASLPCEKILWQFLKVTLEQDSRPKFLGLLGYSREELQKK 480 
WD40-rpts                                                                                      

Query      481 VDTCLKSDSKSQESPQLEAVDLKSDRAHSPCAQASKHTAKEASESSAFFDELIPQNMTPWEIPTTEDTDGLLSQALLLGE 560 
WD40-rpts                                                                                      

Query      561 LRSAVELCLKEERFADAIILAQAGDAELLKWTQERYLAKRRTKTSSLLACVVKKNWKDLVCACRLKNWREALALLLTYSG 640 
WD40-rpts                                                                                      

Query      641 PEKFPELCDMLGTRMEQEGGRALTSEARLCYVCSGSVERLVESWAKFQQASSPMALQELMEQVTVLSRSLELLQGSNKMS 720 
WD40-rpts                                                                                      

Query      721 PGPATTHRLTQYANLLAAQGSLATAMSFLPSDCIQPGVQQLRDRLFHAQGSAVLGQQAPAFPFPRVAVGAALHSKETSSY 800 
WD40-rpts                                                                                      

Query      801 RRGLQPPQQVPAPSVRPRTTAQPSSVMPFSPSQPSPSQGSSDHRVLRPQAILPGHFVPGVRPALSPPQLSGGQSVPAVNP 880 
WD40-rpts                                                                                      

Query      881 AGFCGAWPLPGPTPVMASPDFMQPGSTHLPETPRLLPLPPVGPPGPNPLSSQLPASPVTFSVAPPPGGPRAPCSSALPSS 960 
WD40-rpts                                                                                      

Query      961 GILATCPGPQDSWKVSPASQGNLQRKKLPETFMPPAPITAPLRSLGPEPQQALLPQPLVSSATLPPPGAPRECSLQQLQP 1040
WD40-rpts                                                                                      

Query     1041 LPPERTEKELPPEHQCVKDSFEALLQRCSLTATDLKTKRKLEEAARRLECLYEKLCEGTLSPHVLAGLHEVARCVDAGSF 1120
WD40-rpts                                                                                      

Query     1121 EQGLAVHAQVAGCSSFSEVSSFMPMLKAVLTIAHKLQG 1158
WD40-rpts                                            

7 WD40-repeats found in QUERY=ENSMUSP00000064900 (Len=1158):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     8-47       3.00  238.71  0.03713       10.0%     41.58
  WD 2:  Seg  6    64-101      3.14  244.25  0.03136       10.0%     21.82
  WD 3:  Seg  9   115-150      5.89  358.04  0.00093       32.5%     45.78
  WD 4:  Seg 12   151-197      4.09  283.72  0.00931       17.5%     36.16
  WD 5:  Seg 15   201-245      3.80  271.48  0.01359       35.0%     49.75
  WD 6:  Seg 19   250-289      6.82  396.57  0.00028       30.0%     48.95
  WD 7:  Seg 23   293-332      4.67  307.44  0.00447       22.5%     52.15

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-47     KPAVQ------AW--SPARQYPV--YLATGTS-A-QQL-D-ASFSTNA---TLEIFE
   WD 2   64-101    --SVS------SR--FHKLIWGS--FGSGLLE-N-SGV-I-AGGGDNG---TLTLYN
   WD 3  115-150    -------------AQKQKHTGAV--RALDFNPFQ-GNL-L-ASGASDS---EIFIWD
   WD 4  151-197    LNHLSVPMTPGPK--SQNPPEDI--KALSWNL-Q-VQHIL-ASAHPSG---KAVVWD
   WD 5  201-245    -NEPI------IK--VSSHSSRMNCSGLAWNP-DIATQ-L-VLCSEDDQLPVIQLWD
   WD 6  250-289    -SSPL------KV--LESHSRGI--LSMSWNQAD-AEL-L-LSTAKDS---QIFCWN
   WD 7  293-332    -SEVV------YK--LPTQSSWC--FDVQWCP-Q-SPP-VFSAVSFDG---WISLCS

   WD40 Template    TGECL------RT--LSGHTSGV--TSVSFSP-D-GKR-L-VSGSEDG---TIKVWD