Input parameters:

  Query = ENSMUSP00000064785 (Len=380)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000064785, Len=380):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSSGSALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTVDGQCCALLQGHESYVTFCHLEDEAAFTCSADCTIR 80  
WD40-rpts         (_________________WD 1_________________)   (________________WD 2_____________

Query       81 RWDVRTGQCLQVYRGHTSIVNRILVANDQLFSSSYDRTARVWTVDKGQVSQEFRGHRNCVLTLAYSAPEDLPQDPCMEAA 160 
WD40-rpts      __)   (________________WD 3_______________)   (________________________WD 4_____

Query      161 MGGGLLVTGSSDDTAKVWQVASGCCHQTLRGHTGAVLCLVLHVSSHTAFTGSTDATVRAWDILSGEQLRVFREHQGSVIC 240 
WD40-rpts      __________________)   (_________________WD 5________________)   (_______________

Query      241 LELTDRLLYSGSADRTVKCWLADTGERVLTFPAHRHSVSALKYHAGTLFTGSGDACARAFDAQSGVLQRVFRGHTFVINC 320 
WD40-rpts      _WD 6_______________)   (________________WD 7_______________)   (_______________

Query      321 LQVHGQVLYTASHDGALRLWDVRGLQSVPPLPRRPAAKRSLSRLFSNKVACAAPVPLQPA 380 
WD40-rpts      _WD 8_______________)   (_______________WD 9_______________)

9 WD40-repeats found in QUERY=ENSMUSP00000064785 (Len=380):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-43      11.25  579.40  9.6e-07       47.5%     53.22
  WD 2:  Seg  5    47-83       8.16  451.82  5.1e-05       35.0%     52.93
  WD 3:  Seg  9    87-123      8.36  460.06  3.9e-05       40.0%     52.96
  WD 4:  Seg 13   127-179      7.83  438.15  7.7e-05       37.5%     56.54
  WD 5:  Seg 17   183-221     10.03  528.79  4.6e-06       35.0%     53.05
  WD 6:  Seg 21   225-261      7.79  436.64  8.1e-05       35.0%     51.22
  WD 7:  Seg 25   265-301      7.27  414.91  0.00016       25.0%     50.53
  WD 8:  Seg 29   305-341      7.71  433.07  9.1e-05       30.0%     49.34
  WD 9:  Seg 32   345-380      3.81  272.14  0.01331       10.0%     39.21

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-43     SGSALRVCADHRGGINWLSLSP--------------DGQRLLTGSEDGTARLWS
   WD 2   47-83     -GQCCALLQGHESYVTFCHLED--------------EA--AFTCSADCTIRRWD
   WD 3   87-123    -GQCLQVYRGHTSIVNRILVAN--------------DQ--LFSSSYDRTARVWT
   WD 4  127-179    -GQVSQEFRGHRNCVLTLAYSAPEDLPQDPCMEAAMGGGLLVTGSSDDTAKVWQ
   WD 5  183-221    -GCCHQTLRGHTGAVLCLVLHV--------------SSHTAFTGSTDATVRAWD
   WD 6  225-261    -GEQLRVFREHQGSV--ICLEL--------------TDRLLYSGSADRTVKCWL
   WD 7  265-301    -GERVLTFPAHRHSVSALKYHA--------------GT--LFTGSGDACARAFD
   WD 8  305-341    -GVLQRVFRGHTFVINC--LQV--------------HGQVLYTASHDGALRLWD
   WD 9  345-380    -LQSVPPLPRRPAAKRSLSRLF--------------SNKVACAAPVPLQPA---

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP--------------DGKRLVSGSEDGTIKVWD