Input parameters:

  Query = ENSMUSP00000062246 (Len=1074)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000062246, Len=1074):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEMRLEVLTSTSIKQKKPWPRVSWLGQENEAVFLLDEKFINEINLLSGRTKKKIPSLQPLLKDVVFLATSTNDVWLSGVL 80  
WD40-rpts                                                                                      

Query       81 TTGELFLWNKDQDCLKKIHVTEKPKEAIKAAVASSSRLYLYVAENGKRILLITSSGCILLWEYLELKNILSSKSLSLVGQ 160 
WD40-rpts                                                                                      

Query      161 WSQIVPEEAVSLPSTKDKEAVVAAVFVKNELLGDCCLCSFTFYSGECLKLTFLDIQWYENIFTSVRSLLFRVHWAQQECP 240 
WD40-rpts                                                                                      

Query      241 LCSLIPRCASVKSRGALISAFSRDGLALAVTLNQKDPTATQVLFINTLNFVTLCGGLKGCSNKNPVVPATLTRSYWVGDI 320 
WD40-rpts                                                                                      

Query      321 SWTHDSLFLTCVLKRGSLVLLTCLGELLTLVTFGCSIEFGPAEFIPLHPLITYRPQQLPFQDSNNCVDSSASESDPLRQR 400 
WD40-rpts                                                                                      

Query      401 FSIKAHSRLPYLIISDGYMVTTLRFLDNQSPTMLMRSLLLDSTQRLEKAYQSMMLSEPKDKGLNFRSLDSLRSSLLKHQG 480 
WD40-rpts                     (_______________________________________WD 1_____________________

Query      481 KESSVHCTVPRFLQAEETMKLNETTDFQDFEGEETNEVEQFVNNSFSFCNQKKDLPFDIVKEGRLEFASMFDTVHAKDAS 560 
WD40-rpts      _________________)                                                              

Query      561 KETDRNTAELHRIQKTLLAAWTIGISKNVTEKKLMLNYTILCITHFFYILQFIKCPVPKFDLFLNKSLKRNAWVLCVFQL 640 
WD40-rpts                                                                                      

Query      641 FHQCLSVHYWDMRYRQNMGHLIRLTANTVKLLLTQRQEHGSFSERLLACLSLLRTVTVHLNGTCSLQPEAVPAAADESRP 720 
WD40-rpts                                                                                      

Query      721 AELDSLMVPIFQASKENWPWDSSLKIYPQVTNLVQKPGHRLIALWRLLYKKTLWYQAQLSQRTPDGDRRLTENIRHEVSV 800 
WD40-rpts                                                                                      

Query      801 VKTLLCHVQTNLQMAGDSLNQALELTPISGEECFLLASYEKSVCLWKKALQETQEKGGRRTCFLQLRYYLSLLYCHLYCY 880 
WD40-rpts                                                                                      

Query      881 NLNDAQGLCDHLVRELLSRSQLPVRESQDCSDCEIAVTGNVHPEAALRVVQCMARFMAAYFTNEPLFILPPHSVSVLPPL 960 
WD40-rpts                                                                                      

Query      961 HVKTEHSLRLIPLQHSKVASVIRDQNLSNVWTVEYTLELLFIGGLIPEAVWMAHKLGDWKTSVSIGVAYQVFCKHDCNFA 1040
WD40-rpts                                                                                      

Query     1041 RSKKKGMDLPLNMIPAQIFQEKLQCFLGQPVSLT 1074
WD40-rpts                                        

1 WD40-repeats found in QUERY=ENSMUSP00000062246 (Len=1074):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 20   416-498      2.82  230.99  0.04695       17.5%     14.86

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  416-498    DGYMVTTLRFLDNQSPTMLMRSLLLDSTQRLEKAYQSMMLSEPKDKGLNFRSLDSLRSSLLKHQGKESSVHCTVPRFLQAEET

   WD40 Template    TGECLRTLSGHTSGV----------T-------------SVSFSPDGKRLVSG---------------SEDGTIKVWD-----