Input parameters:

  Query = ENSMUSP00000061270 (Len=1096)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000061270, Len=1096):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTFVPVIPEAYSHVLAEFESLDPLLTALRLDSSRLRCTSIAVSRKWLALGSTGGGLNLIQKDGWKQRLFLSHREGAISQI 80  
WD40-rpts                                                                     (________________

Query       81 ACCSHDDDYVAVATSQGLVVVWELNQERRGKPERIHVSSEHKGRKVTALCWDTAVLRVFVGDHVGKVSAIKLNTLKQAKA 160 
WD40-rpts      _WD 1_________________) (_____________________WD 2____________________)         

Query      161 AAAFVMFPVQTVLTVDSCVVQLDYLDGRLLVSSLTREKFWKIGNKERHGEYGACFFPGRCAGGQQPVIYCARPGSRMWEV 240 
WD40-rpts                                                                                      

Query      241 NFDGEVLSTHQFKKLLSMPPLPVITARSEPQYDHTVGSSQSLAFPKLLHLSEHCVLTWTEKGIYIFIPQNVQVLLWSEVK 320 
WD40-rpts                                                                                      

Query      321 DIQDVAVYKNELFCLHFNGKISHLSLLSVERCVERLLRRGLWDLAARTCCLFQNSIITSRARKTLTADKLEHLKSQLDLT 400 
WD40-rpts                                                                                      

Query      401 ACSELISQLDDLILRFEPLESACSSRRSSISSHESFSILDSGIYRIISSRRGSQSDEDSCSLHSQTFSEDERLKEFASHQ 480 
WD40-rpts                                                                                      

Query      481 EEEQPEQGCGANRNEESASHSPVMSEVDKSEAFLPFSIALPFRSPSPLVSLQAVKDSVSSFVRKTTEKIGTLHGSPELKE 560 
WD40-rpts                                                                                      

Query      561 HMKRKEKEIHQPPKEDRLQELTAATAEAMTKLLDPLVLFEPKVLRMVLLEWLSQLEKTFAMKDFPGISNTSSPTVKSNLG 640 
WD40-rpts                                                                                      

Query      641 AHLLGETEKRVLDEESGEGRRVSLVTEEAGGQITCDPVSNLSEPSADRFRVCSPYAITNSLQRDLAELTTLCLELNVLTS 720 
WD40-rpts                                                                                      

Query      721 AMESVGGHVDRASQQLSPEILACRFLKKYFFLLDLKRAKESIKLTYDSPCVWDTFVEGLKEMARSNPAYTELEEGDLPTG 800 
WD40-rpts                                                                                      

Query      801 LQLLDGSVPSDSPLLIAFATRLYDRFGESALRACIKFYPSISPSDIAQLCRHHPAQFLAYLDSLVKSRPEDQWPSFLEFL 880 
WD40-rpts                                                                                      

Query      881 LQPESLRLEWLLLAVSHDAPPSTSTVDDEGHPRPHSHLLSWGYSQLILLLIKLPADFTTKEKMTDICRSYGFWPGYLTLC 960 
WD40-rpts                                                                                      

Query      961 LELERRREAFTNIVYLNDISLMEGDNGWIPETLEEWKLLLHLLQTKSTRPAPQESLNGSLSDGPAPINVENVALLLAKAM 1040
WD40-rpts                                                                                      

Query     1041 GPDRAWSLLQECGLALELSEKFTRTCDILRIAERRQRALIQGMLEKCDRFLWSQQA 1096
WD40-rpts                                                              

2 WD40-repeats found in QUERY=ENSMUSP00000061270 (Len=1096):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    64-103      3.71  268.09  0.01508       17.5%     53.03
  WD 2:  Seg  8   105-151      3.06  241.10  0.03452       15.0%     40.28

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   64-103    -WKQRL-------FLSHREGAISQIACCSHDDDYVAVATSQGLVVVWE
   WD 2  105-151    NQERRGKPERIHVSSEHKGRKVTALC-WDTAVLRVFVGDHVGKVSAIK

   WD40 Template    TGECLR-------TLSGHTSGVTSVS-FSPDGKRLVSGSEDGTIKVWD