Input parameters:

  Query = ENSMUSP00000060613 (Len=942)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000060613, Len=942):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGLTKQYLRYVASAVFGLIGSQKGNIVFVTLRGEKGRYVAVPACEHVFIWDLRKGEKILILQGNKQEVTCLCPSPDGLHL 80  
WD40-rpts                 (_________________WD 1_________________)   (_________________WD 2____

Query       81 AVGYEDGAIRIFSLLSGEGNITFNGHKAAVTSLKYDQLGGRLASGSKDTDVIIWDVINESGLYRLKGHKDAVTQALFLRE 160 
WD40-rpts      ____________)   (_________________WD 3________________)   (_________________WD 4

Query      161 RNLLVTSGKDTMVKWWDLDNQHCFKTMVGHRTEVWGLVLVSEEKRLITGAADSELRAWDIDYLQEIDDPEEPEPKKIKEC 240 
WD40-rpts      ________________)   (_________________WD 5________________)   (_________________

Query      241 PGIQDTPESEDSTLEADDEKSEDRILSCSKAGSIMREGRDRVVNLAVDKTGRILACHGTDSVLEVFCILSKAEVQKKMDK 320 
WD40-rpts      __WD 6__________________)   (_________________WD 7________________)             

Query      321 KLKKARKKARLNSANEEEDPETSVSMTLQDEILRVAKIKTSAKIKSFDLIHSPQGELKAVFLLQNNLVELYSLNASLPAP 400 
WD40-rpts          (______________WD 8_____________)                                           

Query      401 QPVRTSRITIGGHRSDVRTLSFSSDNIAVLSAAADSIKIWNRSTLQCIRTMPCEYALCSFFVPGDRQVVIGTKTGNLQLY 480 
WD40-rpts         (________________WD 9________________)(_________________WD10_________________

Query      481 DLASGTLLETIAAHDGALWSMSLSPDQRGFVTGGADKAVKFWDFELVTDKNSTQKRLSVKQTRTLQLDEDVLCVSYSPNQ 560 
WD40-rpts      )   (_________________WD11________________)                     (_____________WD

Query      561 KLLAVSLLDCTVKVFYVDTLKFFLSLYGHKLPVLCMDISHDGALIATGSADRNVKIWGLDFGDCHRSLFAHDDSVMYLRF 640 
WD40-rpts      12_____________)   (_________________WD13________________)   (_________________W

Query      641 VPKSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSASHDKSLRLWERTREPLILEEEREMQREA 720 
WD40-rpts      D14________________)   (_________________WD15________________)                  

Query      721 EYEESVAKEDQPAVPGETQGDNYFTGKKTIETVKAAERIMEAIELHREETAKMKEHRAICKAAGKEVPLPVNPILMAHGN 800 
WD40-rpts                                                                                      

Query      801 ISPSAYVLETFKGIRSSELEEALLVLPFSYVPDVLTLFNEFIQTGLDVELLCRCLFFLLRIHFGQITSNQMLVPVIEKLK 880 
WD40-rpts                                                                                      

Query      881 ETTISKVRQVQDAIGFNMAGLDYLKRECEAKSEVMFFAEATSHLEEKKKKRKNRKRMILTLT 942 
WD40-rpts                                                                    

15 WD40-repeats found in QUERY=ENSMUSP00000060613 (Len=942):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    12-51       7.41  420.77  0.00013       12.5%     56.01
  WD 2:  Seg  6    55-93       8.86  480.71  2.1e-05       40.0%     58.27
  WD 3:  Seg 10    97-135      9.44  504.67  9.8e-06       42.5%     56.54
  WD 4:  Seg 14   139-177      8.71  474.53  2.5e-05       32.5%     58.82
  WD 5:  Seg 18   181-219      8.90  482.12  2.0e-05       30.0%     57.78
  WD 6:  Seg 22   223-265      4.46  298.78  0.00584        5.0%     27.53
  WD 7:  Seg 25   269-307      6.61  387.63  0.00037       12.5%     52.21
  WD 8:  Seg 29   325-357      3.33  252.36  0.02446       15.0%     36.38
  WD 9:  Seg 35   404-441      6.87  398.27  0.00027       35.0%     52.79
  WD10:  Seg 39   442-481      6.70  391.26  0.00033       15.0%     51.76
  WD11:  Seg 43   485-523      9.58  510.28  8.2e-06       37.5%     56.37
  WD12:  Seg 48   545-576      5.90  358.32  0.00092       27.5%     47.34
  WD13:  Seg 51   580-618      8.97  485.38  1.8e-05       30.0%     56.28
  WD14:  Seg 55   622-660      8.87  480.96  2.0e-05       32.5%     55.37
  WD15:  Seg 59   664-702      9.27  497.51  1.2e-05       32.5%     56.93

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   12-51     ASAVFGLIGSQ----KGNIVFVTLRGEKGRYVAVP-ACEHVFIWD
   WD 2   55-93     -GEKILILQGN----KQEVTCLCPSPDGLHLAVGY-EDGAIRIFS
   WD 3   97-135    -GEGNITFNGH----KAAVTSLKYDQLGGRLASGS-KDTDVIIWD
   WD 4  139-177    -ESGLYRLKGH----KDAVTQALFLRERNLLVTSG-KDTMVKWWD
   WD 5  181-219    -QHCFKTMVGH----RTEVWGLVLVSEEKRLITGA-ADSELRAWD
   WD 6  223-265    -LQEIDDPEEPEPKKIKECPGIQDTPESEDSTLEA-DDEKSEDRI
   WD 7  269-307    -SKAGSIMREG----RDRVVNLAVDKTGRILACHG-TDSVLEVFC
   WD 8  325-357    --------ARK----KARLNSANEEEDPETSVSMTLQDEILRVAK
   WD 9  404-441    -RTSRITIGGH----RSDVRTLSFSSDNIAVLSAA-AD-SIKIWN
   WD10  442-481    RSTLQCIRTMP----CEYALCSFFVPGDRQVVIGT-KTGNLQLYD
   WD11  485-523    -GTLLETIAAH----DGALWSMSLSPDQRGFVTGG-ADKAVKFWD
   WD12  545-576    --------LQL----DEDVLCVSYSPNQKLLAVSL-LDCTVKVFY
   WD13  580-618    -LKFFLSLYGH----KLPVLCMDISHDGALIATGS-ADRNVKIWG
   WD14  622-660    -GDCHRSLFAH----DDSVMYLRFVPKSHLFFTAG-KDHKIKQWD
   WD15  664-702    -FEHIQTLEGH----HQEIWCLAVSPSGDYVVSAS-HDKSLRLWE

   WD40 Template    TGECLRTLSGH----TSGVTSVSFSPDGKRLVSGS-EDGTIKVWD