Input parameters:

  Query = ENSMUSP00000059880 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000059880, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKQDATRNAAYTVDCEDYVHVVEFNPFESGDSGNLIAYGGSNYVVVGMCTFQEEETDIEGIQYKTLRTFHHGVRVDGIAW 80  
WD40-rpts          (____________________WD 1___________________)        (______________________

Query       81 SPETKLDSLPPVIKFCTSAADLKIRLFTSDLQDKNEYKVLEGHSDFINDLVFHPKEGQELASVSDDHTCRIWNLEGKQTA 160 
WD40-rpts      _WD 2______________________)     (_________________WD 3_________________)  (____

Query      161 HFLLHSPGMSVCWHPEETFKLMVAEKNGTIRFYDLMAQQAILSLQSEQTPLMSAHWCLKNTFKVGAVAGNDWIIWDITRS 240 
WD40-rpts      _____________WD 4________________)   (_________________WD 5________________)    

Query      241 SYPQETRPVHMDRAHLFRWSAISENLFATTGYPGKMASQFQIHHLGHSQPVLIGSVAVGSGLSWHRTLPLCAVGGDHKLL 320 
WD40-rpts         (________________WD 6________________)    (________________WD 7______________

Query      321 FWVTEI 326 
WD40-rpts      __)   

7 WD40-repeats found in QUERY=ENSMUSP00000059880 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-49       6.82  396.26  0.00028       15.0%     50.36
  WD 2:  Seg  6    58-108      5.98  361.89  0.00083       17.5%     50.42
  WD 3:  Seg 10   114-153      8.72  475.07  2.5e-05       30.0%     53.67
  WD 4:  Seg 14   156-194      8.39  461.25  3.8e-05       20.0%     55.61
  WD 5:  Seg 18   198-236      8.45  463.88  3.5e-05       12.5%     57.45
  WD 6:  Seg 22   244-281      5.86  356.68  0.00097       12.5%     42.19
  WD 7:  Seg 25   286-323      6.68  390.60  0.00034       17.5%     49.23

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-49     ATRN---AAYTVDCEDYVHVVEFNPFESGDSGN--------LI--AYGGSNYVVVGMC
   WD 2   58-108    IEGIQYKTLRTFHHGVRVDGIAWSP-----ETKLDSLPPVIKF--CTSAADLKIRLFT
   WD 3  114-153    -KNE---YKVLEGHSDFINDLVFHP----KEGQ--------EL--ASVSDDHTCRIWN
   WD 4  156-194    -GKQ---TAHFLLHSPGMSVCWHPE-----ETF--------KL--MVAEKNGTIRFYD
   WD 5  198-236    -QQA---ILSLQSEQTPLMSAHWCL-----KNT--------FK--VGAVAGNDWIIWD
   WD 6  244-281    -------QETRPVHMDRAHLFRWSA-----ISE--------NLFATTGYPGKMASQFQ
   WD 7  286-323    -GHS---QPVLIGSVAVGSGLSWHR-----TLP--------LC--AVGG-DHKLLFWV

   WD40 Template    TGEC---LRTLSGHTSGVTSVSFSP-----DGK--------RL--VSGSEDGTIKVWD