Input parameters:

  Query = ENSMUSP00000059842 (Len=737)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000059842, Len=737):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYPQGRHPTPLQSGQPFKFSVLEICDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEMSYGLNIEMHKQAEI 80  
WD40-rpts                                                                                      

Query       81 VKRLSAICAQMVPFLTQEHQQQVLQAVDRAKQVTVGELNSLLGQQNQLQPLSHAPPVPLTPRPAGLVGAGATGLLALSGA 160 
WD40-rpts                                                                                      

Query      161 LAAQAQLVAAVKEDRVGVDAEGSRVDRAASRSSSPSPPESLVEEDHPSSRGGSGKQQRAEDKDLSGPYDSEEDKSDYNLV 240 
WD40-rpts                                                                                      

Query      241 VDEDQPSEPPSPVTTPCGKAPLCIPARRDLTDSPASLASSLGSPLPRSKDIALNDLPTGTPASRSCGTSPPQDSSTPGPS 320 
WD40-rpts                                                                                      

Query      321 SASHLCQLAAQPAAPTDSIALRSPLTLSSPFTSSFSLGSHSTLNGDLSMPGSYVGLHLSPQQMAFESHPHLRGSSVSLPG 400 
WD40-rpts                                                                                      

Query      401 IPVAKPAYSFHVSADGQMQPVPFPSDALVGTGIPRHARQLHTLAHGEVVCAVTISSSTQHVYTGGKGCVKVWDVGQPGSK 480 
WD40-rpts                                    (___________________WD 1__________________)(______

Query      481 TPVAQLDCLNRDNYIRSCKLLPDGQSLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAVSPDAKVCFSCCSDGNI 560 
WD40-rpts      _______________WD 2____________________)     (_________________WD 3_____________

Query      561 VVWDLQNQAMVRQFQGHTDGASCIDISDYGTRLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGHCPNQDWLAVGMES 640 
WD40-rpts      ___)   (_________________WD 4________________)(__________________WD 5___________

Query      641 SHVEVLHVRKPEKYQLRLHESCVLSLKFASCGRWFVSTGKDNLLNAWRTPYGASIFQVTCPGWLATRDTGPSAHTWLAPS 720 
WD40-rpts      ______)(__________________WD 6_________________)   (________________WD 7________

Query      721 WLGGAGALGKYNTFINL 737 
WD40-rpts      ________)        

7 WD40-repeats found in QUERY=ENSMUSP00000059842 (Len=737):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   431-473      6.33  376.17  0.00053       30.0%     42.88
  WD 2:  Seg 10   474-520      7.82  437.87  7.8e-05       27.5%     53.37
  WD 3:  Seg 14   526-564      8.22  454.22  4.7e-05       30.0%     54.92
  WD 4:  Seg 18   568-606      9.71  515.61  7.0e-06       35.0%     51.94
  WD 5:  Seg 22   607-647      6.29  374.49  0.00056       20.0%     53.67
  WD 6:  Seg 26   648-688      8.18  452.41  5.0e-05       27.5%     52.50
  WD 7:  Seg 30   692-729      5.59  345.52  0.00137       10.0%     44.09

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  431-473    TGI-------PRHARQLHTL-AHGEVVCAVTISSSTQHVYTGG-KGCVKVWD
   WD 2  474-520    VGQPGSKTPVAQLD----CL-NRDNYIRSCKLLPDGQSLIVGGEASTLSIWD
   WD 3  526-564    -PR-------IKAE----LT-SSAPACYALAVSPDAKVCFSCCSDGNIVVWD
   WD 4  568-606    -QA-------MVRQ----FQ-GHTDGASCIDISDYGTRLWTGGLDNTVRCWD
   WD 5  607-647    LRE-------GRQL----QQHDFSSQIFSLGHCPNQDWLAVGMESSHVEVLH
   WD 6  648-688    VRK------PEKYQ----LR-LHESCVLSLKFASCGRWFVSTGKDNLLNAWR
   WD 7  692-729    -GA-------SIFQ----VT-CP-GWLATRDTGPSAHTWLAPSWLGGAGALG

   WD40 Template    TGE-------CLRT----LS-GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD