WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000059413 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000059413 (Len=3786) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000059413, Len=3786): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSTDSNSLAREFLIDVNQLCNAVVQRAEAREEEEEETHMATLGQYLVHGRGFLLLTKLNSIIDQALTCREELLTLLLSLL 80
WD40-rpts
Query 81 PLVWKIPVQEQQATDFNLPLSSDIILTKEKNSSLQKSTQGKLYLEGSAPSGQVSAKVNLFRKIRRQRKSTHRYSVRDARK 160
WD40-rpts
Query 161 TQLSTSDSEGNSDEKSTVVSKHRRLHALPRFLTQSPKEGHLVAKPDPSATKEQVLSDTMSVENSREVILRQDSNGDILSE 240
WD40-rpts
Query 241 PAALSILSNMNNSPFDLCHVLLSLLEKVCKFDIALNHNSSLALSVVPTLTEFLAGFGDCCNQSDTLEGQLVSAGWTEEPV 320
WD40-rpts
Query 321 ALVQRMLFRTVLHLMSVDVSTAEAMPESLRKNLTELLRAALKIRACLEKQPEPFSPRQKKTLQEVQEGFVFSKYRHRALL 400
WD40-rpts
Query 401 LPELLEGVLQLLISCLQSAASNPFYFSQAMDLVQEFIQHQGFNLFETAVLQMEWLLSRDGVPSEAAEHLKALINSVIKIM 480
WD40-rpts
Query 481 STVKKVKSEQLHHSMCTRKRHRRCEYSHFMQHHRDLSGLLVSAFKNQLSKSPFEETAEGDVQYPERCCCIAVCAHQCLRL 560
WD40-rpts
Query 561 LQQVSLSTTCVQILSGVHSVGICCCMDPKSVIVPLLHAFKLPALKAFQQHILNVLSKLLLDQLGGAELSPRIKKAACNIC 640
WD40-rpts (_____
Query 641 TVDSDQLAKLGETLQGTLCGAGPTSGLPSPSYRFQGILPSSGSEDLLWKWDALEAYQSFVFQEDRLHNIQIANHICNLIQ 720
WD40-rpts __________________________WD 1_______________________________)
Query 721 KGNVVVQWKLYNYIFNPVLQRGVELVHHCQQLSIPSAQTHMCSQLKQYLPQEVLQIYLKTLPVLLKSRVIRDLFLSCNGV 800
WD40-rpts
Query 801 NQIIELNYLDGIRSHSLKAFETLIVSLGEQQKDAAVLDVDGLDIQQELPSLSVGPSLHKQQASSDSPCSLRKFYASLREP 880
WD40-rpts
Query 881 DPKKRKTIHQDVHINTINLFLCVAFLCVSKEADSDRESANESEDTSGYDSTASEPLSHMLPCLSLENVVLPSPECLHHAA 960
WD40-rpts
Query 961 DIWSMCRWIYMLNSVFQKQFHRLGGFQVCHELIFMIIQKLFRSHTEDQGRRQGEMSRNENQELIRISYPELTLKGDVSSA 1040
WD40-rpts
Query 1041 TAPDLGFLRKSADSVRGFQSQPVLPTSAEQIVATESVPGERKAFMSQQSETSLQSIRLLESLLAICLHSARACQQKMELE 1120
WD40-rpts
Query 1121 LPSQGLSVENILCELREHLSQSKVAETELAKPLFDALLRVALGNHSADLGPGDAVTEKSHPSEEELLSQPGDFSEEAEDS 1200
WD40-rpts
Query 1201 QCCSLKLLGEEEGYEADSESNPEDVDTQDDGVELNPEAEGFSGSIVSNNLLENLTHGEIIYPEICMLGLNLLSASKAKLD 1280
WD40-rpts
Query 1281 VLAHVFESFLKIVRQKEKNISLLIQQGTVKILLGGFLNILTQTNSDFQACQRVLVDLLVSLMSSRTCSEDLTLLLRIFLE 1360
WD40-rpts
Query 1361 KSPCTEILLLGIHKIVESDFTMSPSQCLTFPFLHTPSLSNGVLSQKPPGILNSKALGLLRRARISRGKKEADRESFPYRL 1440
WD40-rpts
Query 1441 LSSWHIAPIHLPLLGQNCWPHLSEGFSVSLGLMWNTSESESAAERGKRVKKRNKPSVLEDSSFEGAEGDRPEVTESINPG 1520
WD40-rpts
Query 1521 DRLIEDGCIHLISLGSKALMIQVWADPHSGTFIFRVCMDSNDDTKAVSLAQVESQENIFFPSKWQHLVLTYIQHPQGKKN 1600
WD40-rpts
Query 1601 VHGEISIWVSGQRKTDVILDFVLPRKTSLSSDSNKTFCMIGHCLTSQEESLQLAGKWDLGNLLLFNGAKIGSQEAFFLYA 1680
WD40-rpts
Query 1681 CGPNYTSIMPCKYGQPVIDYSKYINKDILRCDEIRDLFMTKKEVDVGLLIESLSVVYTTCCPAQYTIYEPVIRLKGQVKT 1760
WD40-rpts
Query 1761 QPSQRPFSSKEAQSILLEPSQLKGLQPTECKAIQGILHEIGGAGTFVFLFARVVELSSCEETQALALRVILSLIKYSQQR 1840
WD40-rpts
Query 1841 TQELENCNGLSMIHQVLVKQKCIVGFHILKTLLEGCCGEEVIHVSEHGEFKLDVESHAIIQDVKLLQELLLDWKIWNKAE 1920
WD40-rpts
Query 1921 QGVWETLLAALEVLIRVEHHQQQFNIKQLLNAHVVHHFLLTCQVLQEHREGQLTSMPREVCRSFVKIIAEVLGSPPDLEL 2000
WD40-rpts
Query 2001 LTVIFNFLLAVHPPTNTYVCHNPTNFYFSLHIDGKIFQEKVQSLAYLRHSSSGGQAFPSPGFLVISPSAFTAAPPEGTSS 2080
WD40-rpts
Query 2081 SNIVPQRMAAQMVRSRSLPAFPTYLPLIRAQKLAASLGFSVDKLQNIADANPEKQNLLGRPYALKTSKEEAFISSCESAK 2160
WD40-rpts
Query 2161 TVCEMEALLGAHASANGVSRGSPRFPRARVDHKDVGTEPRSDDDSPGDESYPRRPDNLKGLASFQRSQSTVASLGLAFPS 2240
WD40-rpts
Query 2241 QNGSAVASRWPSLVDRNADDWENFTFSPAYEASYNRATSTHSVIEDCLIPICCGLYELLSGVLLVLPDAMLEDVMDRIIQ 2320
WD40-rpts (
Query 2321 ADILLVLVNHPSPAIQQGVIKLLHAYINRASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFVEMFFGRPIGLDEEFD 2400
WD40-rpts ________________________________________________________________________________
Query 2401 LEEVKHMELFQKWSVIPVLGLIETSLYDNVLLHNALLLLLQVLNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIPVNE 2480
WD40-rpts ________WD 2____________________________________________________________________
Query 2481 YKLLACDIQQLFIAVTIHACSSSGTQYFRVIEDLIVLLGYLHNSKNKRTQNMALALQLRVLQAALEFIRSTANHDSESPV 2560
WD40-rpts ___________________)
Query 2561 HSPSAHRHSVPPKRRSIAGSRKFPLAQTESLLMKMRSVASDELHSMMQRRMSQEHPSQASEAELAQRLQRLTILAVNRII 2640
WD40-rpts
Query 2641 YQELNSDIIDILRTPENTSQSKTSVSQTEISEEDMHHEQPSVYNPFQKEMLTYLLDGFKVCIGSSKTSVSKQQWTKILGS 2720
WD40-rpts
Query 2721 CKETLRDQLGRLLAHILSPTHTVQERKQILEIVHEPAHQDILRDCLSPSPQHGAKLVLYLSELIHNHQDELSEEEMDTAE 2800
WD40-rpts
Query 2801 LLMNALKLCGHKCIPPSAPSKPELIKIIREEQKKYESEESVSKGSWQKTVNNNQQSLFQRLDFKSKDISKIAADITQAVS 2880
WD40-rpts
Query 2881 LSQGIERKKVIQHIRGMYKVDLSASRHWQECIQQLTHDRAVWYDPIYYPTSWQLDPTEGPNRERRRLQRCYLTIPNKYLL 2960
WD40-rpts
Query 2961 RDRQKSEGVLRPPLSYLFEDKTHSSFSSTVKDKAASESIRVNRRCISVAPSRETAGELLLGKCGMYFVEDNASDAVESSS 3040
WD40-rpts
Query 3041 LQGELEPASFSWTYEEIKEVHRRWWQLRDNAVEIFLTNGRTLLLAFDNNKVRDDVYQSILTNNLPNLLEYGNITALTNLW 3120
WD40-rpts
Query 3121 YSGQITNFEYLTHLNKHAGRSFNDLMQYPVFPFILSDYVSETLDLNDPSIYRNLSKPIAVQYKEKEDRYVDTYKYLEEEY 3200
WD40-rpts
Query 3201 RKGAREDDPMPPVQPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMTDVKELIP 3280
WD40-rpts
Query 3281 EFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESDHVSQNICHWIDLVFGYKQKGKASVQAI 3360
WD40-rpts
Query 3361 NVFHPATYFGMDVSAVEDPVQRRALETMIKTYGQTPRQLFHTAHASRPGAKLNIEGELPAAVGLLVQFAFRETREPVKEV 3440
WD40-rpts
Query 3441 THPSPLSWIKGLKWGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYNKEQGVRSMNNTNIQWSA 3520
WD40-rpts
Query 3521 ILSWGYADNILRLKSKQSEPPINFIQSSQQHQVTSCAWVPDSCQLFTGSKCGVITAYTNRLTSSTPSEIEMESQMHLYGH 3600
WD40-rpts (___________________WD 3__________________)(_____________________
Query 3601 TEEITGLCVCKPYSVMISVSRDGTCIVWDLNRLCYVQSLAGHKSPVTAVSASETSGDIATVCDSAGGGSDLRLWTVNGDL 3680
WD40-rpts __WD 4______________________)(____________________WD 5____________________)(____
Query 3681 VGHVHCREIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIISLTFSCDGHHLYTANSEGTV 3760
WD40-rpts ________________WD 6___________________) (_______________WD 7____________
Query 3761 IAWCRKDQQRVKLPMFYSFLSSYAAG 3786
WD40-rpts ___)
 7 WD40-repeats found in QUERY=ENSMUSP00000059413 (Len=3786): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 7 635-702 4.66 307.04 0.00453 35.0% -7.87 WD 2: Seg 31 2320-2500 3.58 262.50 0.01791 27.5% 8.71 WD 3: Seg 47 3536-3578 4.54 302.34 0.00523 27.5% 52.19 WD 4: Seg 51 3579-3629 5.95 360.41 0.00086 35.0% 46.75 WD 5: Seg 55 3630-3675 3.68 266.85 0.01567 27.5% 45.29 WD 6: Seg 59 3676-3720 3.21 247.31 0.02856 22.5% 48.97 WD 7: Seg 63 3729-3764 4.59 304.28 0.00493 25.0% 49.41Multiple sequence alignment of 7 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 635-702 AAC---N--ICT-----------VDSDQLAKLGETLQGTLCGAGPTS-------------------------------------------G-------------LPSPSYRF-----QG-------ILP-----S-------------------------------S---------G-------------SEDLLWKWDALEAYQSFVFQ-------------------- WD 2 2320-2500 QAD---I--LLV-----------LVN------------------HPSPAIQQGVIKLLHAYINRASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFVEMFFGRPIGLDE-----EFDLEEVKHMELFQKWSVIPVLGLIETSLYDNVLLHNALLLLLQVLNSCSKVADMLLDNGLLYVLCNTVAALNGLEKNIP----------VNEYKLLACDIQQLFIAVTIHAC WD 3 3536-3578 KQSEPPI--NFI-----------QSS------------------QQH-------------------------------------------Q-------------VTSCAWVP-----DS-------CQL-----F-------------------------------T---------G-------------SKCGVIT----------AYT-------------------- WD 4 3579-3629 NRL---T--SSTPSEIEMESQMHLYG------------------HTE-------------------------------------------E-------------ITGLCVCK-----PY-------SVM-----I-------------------------------S---------V-------------SRDGTCI----------VWD-------------------- WD 5 3630-3675 LNR---LCYVQS-----------LAG------------------HKS-------------------------------------------P-------------VTAVSASE-----TS-------GDI-----A---------------------------TVCDS---------A-------------GGGSDLR----------LWT-------------------- WD 6 3676-3720 VNG---D--LVG-----------HVH------------------CRE-------------------------------------------I-------------ICSVAFSNQPEGVSI-------NVI-----A-------------------------------G---------G-------------LENGIVR----------LWS-------------------- WD 7 3729-3764 ---------EIT-----------FPK------------------SNK-------------------------------------------P-------------IISLTFSC-----DG-------HHL-----Y-------------------------------T---------A-------------NSEGTVI----------AWC-------------------- WD40 Template TGE---C--LRT-----------LSG------------------HTS-------------------------------------------G-------------VTSVSFSP-----DG-------KRL-----V-------------------------------S---------G-------------SEDGTIK----------VWD-------------------- |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |