Input parameters:

  Query = ENSMUSP00000059211 (Len=397)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000059211, Len=397):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLSFLSARQSGLEDPLRLRRAQSTRRVLGLELNKDRDVERIHGSGVNTLDIEPVEGRYMLSGGSDGVVVLYDLENASRQP 80  
WD40-rpts      (____________WD 1___________)   (_________________WD 2_________________)        

Query       81 HYTCKAVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQAADVFNFEETVYSHHMSPAATKHCLVA 160 
WD40-rpts            (__________________WD 3__________________)(___________________WD 4________

Query      161 VGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRHDYILATASADSRVKLWDVRRASGCLLTLDQHNGKKSQAAESA 240 
WD40-rpts      ___________)   (_________________WD 5_________________)           (_____________

Query      241 NTAHNGKVNGLCFTSDGLHLLTIGTDNRMRLWNSSSGDNTLVNYGKVCNDSRKGLQFAVSCGCSSEFVFVPHGSTIAVYA 320 
WD40-rpts      ________WD 6____________________)   (___________________WD 7___________________)

Query      321 VHSGERLAMLKGHYKSVDCCVFQPNFQELYSGSRDCNILAWVPPSYEPVPDDDDEAPAKSQLNPAFADAWSSSDEDG 397 
WD40-rpts         (_________________WD 8________________)                                   

8 WD40-repeats found in QUERY=ENSMUSP00000059211 (Len=397):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-29       3.99  279.41  0.01064       12.5%     37.52
  WD 2:  Seg  3    33-72       7.64  430.36  9.9e-05       27.5%     49.51
  WD 3:  Seg  7    87-128      7.79  436.45  8.2e-05       35.0%     39.36
  WD 4:  Seg 10   129-172      6.21  371.10  0.00062       17.5%     53.25
  WD 5:  Seg 14   176-215      8.78  477.25  2.3e-05       37.5%     55.99
  WD 6:  Seg 19   227-273      8.45  463.53  3.5e-05       20.0%     46.78
  WD 7:  Seg 22   277-320      6.58  386.66  0.00038       17.5%     51.80
  WD 8:  Seg 26   324-362      9.81  519.91  6.1e-06       40.0%     55.24

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-29     --------------------M-----LSFLSARQSG-LEDP---LRLRRAQSTRRVLG
   WD 2   33-72     -N-------KD-RDV-ERIHG-----SGVNTLDIEPVEGRY---MLSGGSDGVVVLYD
   WD 3   87-128    VC-------SV-GRSHPDVHK-----YSVETVQWYPHDTGM---FTSSSFDKTLKVWD
   WD 4  129-172    TN-------TLQAAD-VFNFE-----ETVYSHHMSP-AATKHCLVAVGTRGPKVQLCD
   WD 5  176-215    -G-------SC-SHI-LQGHR-----QEILAVSWSPRHDYI---LATASADSRVKLWD
   WD 6  227-273    DQHNGKKSQAA-ESA-NTAHN-----GKVNGLCFTS-DGLH---LLTIGTDNRMRLWN
   WD 7  277-320    -G-------DN-TLV-NYGKVCNDSRKGLQFAVSCG-CSSE---FVFVPHGSTIAVYA
   WD 8  324-362    -G-------ER-LAM-LKGHY-----KSVDCCVFQP-NFQE---LYSGSRDCNILAWV

   WD40 Template    TG-------EC-LRT-LSGHT-----SGVTSVSFSP-DGKR---LVSGSEDGTIKVWD