Input parameters:

  Query = ENSMUSP00000057482 (Len=920)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000057482, Len=920):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTAEETVNVKEVEIIKLILDFLNSKKLHISMLALEKESGVINGLFSDDMLFLRQLILDGQWDEVLQFIQPLECMEKFDKK 80  
WD40-rpts                                                                                      

Query       81 RFRYIILKQKFLEALCVNNAMSAEDEPQHLEFTMQEAVQCLHALEEYCPSKDDYSKLCLLLTLPRLTNHAEFKDWNPSTA 160 
WD40-rpts                                                                                      

Query      161 RVHCFEEVCVMVAEFIPADRKLSEAGFKASNNRLFQLVMKGLLYECCVEFCQSKATGEEITESEVLLGIDLLCGNGCDDL 240 
WD40-rpts                                                                                      

Query      241 DLSLLSWLQNLPSSVFSCAFEQKMLNIHVDKLLKPTKAAYADLLTPLISKLSPYPSSPMRRPQSADAYMTRSLNPALDGL 320 
WD40-rpts                                                                                      

Query      321 TCGLTSHDKRISDLGNKTSPMSHSFANFHYPGVQNLSRSLMLENTECHSIYEESPERSDTPVEAQQPVSSEAMCQGSGLE 400 
WD40-rpts                                                                                      

Query      401 KEPANGAQNPVPAKQEKNELRDSTEQFQEYYRQRLRYQQHLEQKEQQRQMYQQMLLEGGVNQEDGPDQQQNLTEQFLNRS 480 
WD40-rpts                                                                                      

Query      481 IQKLGELNIGMDSLGNEVPVLNQQCSGSKNNGSNNSSVTSFSTPPQDSSQRLIHDTANIHTSTPRNPGSTNHIPFHEDSP 560 
WD40-rpts        (_______________________WD 1_______________________)            (_____________

Query      561 CGSQNSSEHSVIKPSPGDSSGNLSRSKGEEDDKSKKQFVCINTLEDTQAVRAVAFHPSGSLYAVGSNSKTLRVCAYPEKM 640 
WD40-rpts      ____WD 2________________)                 (______________WD 3_____________)(____

Query      641 DASAHDNPKQPVVRFKRNKHHKGSIYCVAWSPCGQLLATGSNDKYVKVLPFNAETCNATGPDLEFSMHDGTIRDLAFMEG 720 
WD40-rpts      _____________________WD 4________________________)(_______________________WD 5__

Query      721 PESGGAILISAGAGDCNIYTTDCQRGQGLHALSGHTGHILALYTWSGWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGT 800 
WD40-rpts      _____________________)   (________________WD 6________________)         (_______

Query      801 GSAVASVAVDPSGRLLATGQEDSSCMLYDIRGGRMVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLTKQL 880 
WD40-rpts      _________WD 7_______________)   (_________________WD 8________________)       (_

Query      881 PLMVVGEHKDKVIQCRWHTQDLSFLSSSADRTVTLWTYSG 920 
WD40-rpts      ________________WD 9________________)   

9 WD40-repeats found in QUERY=ENSMUSP00000057482 (Len=920):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   483-534      3.82  272.40  0.01321        7.5%     22.17
  WD 2:  Seg  5   547-585      5.04  322.77  0.00278        7.5%     18.84
  WD 3:  Seg  7   603-635      6.43  380.33  0.00047       30.0%     46.31
  WD 4:  Seg 10   636-690      7.71  433.18  9.0e-05       30.0%     47.93
  WD 5:  Seg 13   691-742      5.12  325.95  0.00252       20.0%     41.58
  WD 6:  Seg 16   746-783      8.75  475.94  2.4e-05       37.5%     52.28
  WD 7:  Seg 21   793-829      8.94  483.97  1.9e-05       35.0%     46.83
  WD 8:  Seg 24   833-871      9.69  514.92  7.1e-06       42.5%     56.95
  WD 9:  Seg 28   879-917      7.50  424.38  0.00012       20.0%     49.79

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  483-534    KLG---------------EL-------NIGMDSLGNEVPVLNQQCSGSKNNGSN-----NSSVTSFSTPPQDSSQRLIH
   WD 2  547-585    -PG---------------ST-------N------------HIPFHEDSPCGSQN-----SSEHSVIKPSPGDSSGNLSR
   WD 3  603-635    TLE-----------------------------------------DTQAVRAVAF-----HPSGSLYAVGSNSKTLRVCA
   WD 4  636-690    YPEKMDASAHDNPKQPVVRF-------K------------RNKHHKGSIYCVAW-----SPCGQLLATGSNDKYVKVLP
   WD 5  691-742    FNA---------------ETCNATGPDL------------EFSMHDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTD
   WD 6  746-783    -GQ---------------GL-------H------------ALSGHTGHILAL-Y-----TWSGWMIASGSQDKTVRFWD
   WD 7  793-829    VG-------------------------T------------TFHGTGSAVASVAV-----DPSGRLLATGQEDSSCMLYD
   WD 8  833-871    -GR---------------MV-------Q------------SYHPHSSDVRSVRF-----SPGAHYLLTGSYDMKIKVTD
   WD 9  879-917    -QL---------------PL-------M------------VVGEHKDKVIQCRW-----HTQDLSFLSSSADRTVTLWT

   WD40 Template    TGE---------------CL-------R------------TLSGHTSGVTSVSF-----SPDGKRLVSGSEDGTIKVWD