Input parameters:

  Query = ENSMUSP00000057209 (Len=783)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000057209, Len=783):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEVSDRIASLEQRVQMQEDDIQLLKSALADVVRRLNITEEQQAVLNRKGPTKARPLGQTLPLRTTVNNGTVLPKKPSASL 80  
WD40-rpts                                                                                      

Query       81 PAPSGARKEVVVPVTKSINRTSSSERVSPGGRRESSGDSKGSRNRTGSTSSSSSGKKNSESKPKEPAFSPEEGYVKMFLR 160 
WD40-rpts                     (_____________WD 1_____________)  (_____________________WD 2_____

Query      161 GRPVTMYMPKDQVDSYSLEAKAELPTKRLKLEWVYGYRGRDCRNNLYLLPTGETVYFIASVVVLYNVEEQLQRHYAGHND 240 
WD40-rpts      ________________)                                                   (___________

Query      241 DVKCLAVHPDRITIATGQVAGTSKDGKQLPPHVRIWDSVTLNTLHVIGIGFFDRAVTCIAFSKSNGGGHLCAVDDSNDHV 320 
WD40-rpts      ___________WD 3_____________________)(_____________________WD 4_________________

Query      321 LSVWDWQKEERLADVKCSNEAVFAADFHPTDTNIIVTCGKSHLYFWTLEGNSLNKKQGLFEKQEKPKFVLCVTFSENGDT 400 
WD40-rpts      ____)   (_________________WD 5________________)            (______________WD 6__

Query      401 ITGDSSGNILVWGKGTNRISYAVQGAHEGGIFALCMLRDGTLVSGGGKDRRLISWNGNYQKLHKAEIPEQFGPIRTVAEG 480 
WD40-rpts      ____________)(___________________WD 7__________________)   (_________________WD 

Query      481 KGNVILIGTTRNFVLQGTLSGDFTPITQGHTDELWGLAIHASKPQFLTCGHDKHATLWDAVGHRPVWDKIIEDPAQSSGF 560 
WD40-rpts      8________________)  (_________________WD 9________________)  (_________________W

Query      561 HPSGSVVAVGTLTGRWFVFDTETKDLVTVHTDGNEQLSVMRYSPDGNFLAIGSHDNCIYIYGVTDNGRKYTRVGKCSGHS 640 
WD40-rpts      D10________________)   (_________________WD11________________)       (__________

Query      641 SFITHLDWSVNSQFLVSNSGDYEILYWVPSACKQVVSVETTRDIEWATYTCTLGFHVFGVWPEGSDGTDINAVCRAHERK 720 
WD40-rpts      _______WD12________________)                       (___________________WD13_____

Query      721 LLCTGDDFGKVHLFSYPCSQFRAPSHIYSGHSSHVTNVDFLCEDSHLISTGGKDTSIMQWRVI 783 
WD40-rpts      ______________)     (__________________WD14_________________)  

14 WD40-repeats found in QUERY=ENSMUSP00000057209 (Len=783):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    96-127      4.47  299.37  0.00574       20.0%     23.98
  WD 2:  Seg  5   130-177      4.42  297.36  0.00611       12.5%     28.81
  WD 3:  Seg 13   229-277      6.92  400.37  0.00025       27.5%     53.61
  WD 4:  Seg 17   278-325      5.85  356.48  0.00098       25.0%     47.06
  WD 5:  Seg 21   329-367      7.39  420.00  0.00014       15.0%     58.12
  WD 6:  Seg 25   380-413      5.25  331.43  0.00212       25.0%     48.37
  WD 7:  Seg 28   414-456      7.32  417.12  0.00015       20.0%     55.26
  WD 8:  Seg 32   460-498      4.89  316.56  0.00337        7.5%     52.35
  WD 9:  Seg 36   501-539      8.18  452.39  5.0e-05       17.5%     54.72
  WD10:  Seg 40   542-580      6.70  391.32  0.00033       22.5%     55.41
  WD11:  Seg 44   584-622      8.47  464.33  3.4e-05       22.5%     58.28
  WD12:  Seg 48   630-668      8.12  449.88  5.4e-05       32.5%     53.18
  WD13:  Seg 54   692-735      6.11  367.10  0.00070       15.0%     43.67
  WD14:  Seg 58   741-781      8.33  458.78  4.1e-05       32.5%     50.22

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   96-127    ---------------KSINRTSSSERV-SPG---------GR----RESSGDSKGS----------RNRTG
   WD 2  130-177    -SS---S----SSGKKNSESKPKEPAF-SPEEGYVKMFLRGR----PVTMYMPKDQ----------VDSYS
   WD 3  229-277    -EQ---L----QRHYAGHNDDVKCLAV-HPD---------RI----TIATGQVAGTSKDGKQLPPHVRIWD
   WD 4  278-325    SVT---LNTLHVIGIGFFDRAVTCIAF-SKS---------NGGGHLCAVDDSNDHV----------LSVWD
   WD 5  329-367    -EE---R----LADVKCSNEAVFAADF-HPT---------DT----NIIVTCGKSH----------LYFWT
   WD 6  380-413    ------------FEKQEKPKFVLCVTF-SEN---------GD----TI-TGDSSGN----------ILVWG
   WD 7  414-456    KGTNRIS----YAVQGAHEGGIFALCM-LRD---------GT----LVSGGGKDRR----------LISWN
   WD 8  460-498    -QK---L----HKAEIPEQFGPIRTVA-EGK---------GN----VILIGTTRNF----------VLQGT
   WD 9  501-539    -GD---F----TPITQGHTDELWGLAI-HAS---------KP----QFLTCGHDKH----------ATLWD
   WD10  542-580    -GH---R----PVWDKIIEDPAQSSGF-HPS---------GS----VVAVGTLTGR----------WFVFD
   WD11  584-622    -KD---L----VTVHTDGNEQLSVMRY-SPD---------GN----FLAIGSHDNC----------IYIYG
   WD12  630-668    -YT---R----VGKCSGHSSFITHLDW-SVN---------SQ----FLVSNSGDYE----------ILYWV
   WD13  692-735    TLG---FHVFGVWPEGSDGTDINAVCR-AHE---------RK----LLCTGDDFGK----------VHLFS
   WD14  741-781    FRA---P----SHIYSGHSSHVTNVDFLCED---------SH----LISTGGKDTS----------IMQWR

   WD40 Template    TGE---C----LRTLSGHTSGVTSVSF-SPD---------GK----RLVSGSEDGT----------IKVWD