Input parameters:

  Query = ENSMUSP00000056862 (Len=472)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000056862, Len=472):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSAFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRVDKNYPLVTGH 80  
WD40-rpts                                                                            (_________

Query       81 TGPVLDIDWCPHNDNVIASASDDTTVMVWQIPDYTPVRNITEPVITLEGHSKRVGILSWHPTARNVLLSAGGDNVIIIWN 160 
WD40-rpts      ________WD 1_________________)          (_________________WD 2_________________)

Query      161 VGTGEVLLSLDDIHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKSQVVAERFAAHEGMRPMRAVFTRLGHIFTTGFTR 240 
WD40-rpts         (_________________WD 3_________________)(_____________________WD 4___________

Query      241 MSQRELGLWDPNNFEEPVALQEMDTSNGVLLPFYDPDSSIVYLCGKGDSSIRYFEITEEPPFVHYLNTFSSKEPQRGMGF 320 
WD40-rpts      _________)(____________________WD 5___________________) (__________________WD 6_

Query      321 MPKRGLDVSKCEIARFYKLHERKCEPIIMTVPRKSDLFQDDLYPDTPGPEPALEADEWLSGQDAEPVLISLKEGYVPPKH 400 
WD40-rpts      _________________)                                                              

Query      401 RELRVTKRNILDVRPPASPRRSQSASEAPLSQQHTLETLLEEIKALRDRVQAQEERITALENMLCELVDGTD 472 
WD40-rpts                                                                              

6 WD40-repeats found in QUERY=ENSMUSP00000056862 (Len=472):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6    71-110      7.13  409.34  0.00019       27.5%     43.70
  WD 2:  Seg  9   121-160      6.84  397.31  0.00027       32.5%     50.80
  WD 3:  Seg 13   164-203      7.42  421.16  0.00013       30.0%     55.42
  WD 4:  Seg 17   204-250      3.30  251.12  0.02541       15.0%     44.48
  WD 5:  Seg 21   251-295      4.41  296.99  0.00618       17.5%     40.45
  WD 6:  Seg 25   297-338      3.23  248.19  0.02779       17.5%     38.69

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-110    -DK---NYPLVT----G-HTG-PVLDIDWCPHNDNV-I-ASA---SDDTTVMVWQ
   WD 2  121-160    -TE---PVITLE----G-HSK-RVGILSWHP-TARNVL-LSA---GGDNVIIIWN
   WD 3  164-203    -GE---VLLSLD----DIHPD-VIHSVCWNS-NGSL-L-ATT---CKDKTLRIID
   WD 4  204-250    PRKSQVVAERFA----A-HEGMRPMRAVFTR-LGHI-F-TTGFTRMSQRELGLWD
   WD 5  251-295    PNN---FEEPVALQEMD-TSN-GVLLPFYDP-DSSI-VYLCG---KGDSSIRYFE
   WD 6  297-338    TEE-PPFVHYLN----T-FSS-KEPQRGMGF-MPKR-G-LDV---SKCEIARFYK

   WD40 Template    TGE---CLRTLS----G-HTS-GVTSVSFSP-DGKR-L-VSG---SEDGTIKVWD