Input parameters:

  Query = ENSMUSP00000055145 (Len=460)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000055145, Len=460):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLRWLIGGGREPQGLAEKAALQTIGEDQGQNPYTELLVLEAHRDIVRFLVRLDDFRFASAGDDGIIVVWNAQTGEKLLEL 80  
WD40-rpts                                      (________________WD 1________________)   (______

Query       81 RGHTQKITAVIAFPPLDSCEASSQLLLTASADRTVGVWDCDTGRQIQRVTCFQSTVKCLTVLQRLDIWLSGGSDLGVWNR 160 
WD40-rpts      ______________WD 2____________________)   (________________WD 3_______________) 

Query      161 KLDLLCKTSHLSDTGISALVEIPGNCVAAAVGRELIIFRLVTPTEELPEWDIIEVKRLLDHQDNILSLANINDTGFVTGS 240 
WD40-rpts        (_________________WD 4________________)          (________________WD 5________

Query      241 HVGELLIWDALDWTVQACERTFWSPTAQLDAQQEIKLFQKQNDISINHFTCDEENIFAAVGRGLYVYNLQLKRVIACQKT 320 
WD40-rpts      ________)                     (________________WD 6________________)    (_______

Query      321 AHDSNILHIDKLPNRQLISCSEDGAVRMWEVREKQQLAAEPVPTGFFNMWGFGRVNKQASQPVKKQEENVTTCSLELIGD 400 
WD40-rpts      _________WD 7________________)   (_________________WD 8________________)  (_____

Query      401 LIGHSSSVEMFLYFEDHGLVTCSADHLIILWKNGERESGVRSLKLFQKLEENGDLYPESP 460 
WD40-rpts      ___________WD 9________________)                            

9 WD40-repeats found in QUERY=ENSMUSP00000055145 (Len=460):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    33-70       6.38  378.09  0.00050       30.0%     52.77
  WD 2:  Seg  7    74-119      8.45  463.73  3.5e-05       42.5%     56.42
  WD 3:  Seg 11   123-159      6.70  391.57  0.00033       20.0%     52.77
  WD 4:  Seg 15   163-201      7.10  408.05  0.00020       10.0%     45.74
  WD 5:  Seg 19   212-249      7.00  403.95  0.00022       25.0%     50.99
  WD 6:  Seg 24   271-308      5.72  350.74  0.00117       10.0%     52.91
  WD 7:  Seg 28   313-350      6.97  402.50  0.00023       25.0%     52.03
  WD 8:  Seg 32   354-392      7.29  415.65  0.00016       12.5%     47.79
  WD 9:  Seg 36   395-432      7.63  430.02  1.0e-04       32.5%     52.17

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   33-70     YTELLVLEAHRDIVRFL-VRL-------DDFRFASAGDDGIIVVWN
   WD 2   74-119    GEKLLELRGHTQKITAVIAFPPLDSCEASSQLLLTASADRTVGVWD
   WD 3  123-159    GRQIQRVTCFQSTVKCLTVLQ-------RLDIWLSGGSD--LGVWN
   WD 4  163-201    DLLCKTSHLSDTGISALVEIP-------GNCVAAAVGRELIIFRLV
   WD 5  212-249    IIEVKRLLDHQDNILSLANIN-------DTG-FVTGSHVGELLIWD
   WD 6  271-308    AQQEIKLFQKQNDISINHFTC-------DEENIFAAV-GRGLYVYN
   WD 7  313-350    RVIACQKTAHDSNILHIDKLP-------NRQ-LISCSEDGAVRMWE
   WD 8  354-392    KQQLAAEPVPTGFFNMWGFGR-------VNKQASQPVKKQEENVTT
   WD 9  395-432    LELIGDLIGHSSSVEMFLYFE-------DHG-LVTCSADHLIILWK

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-------DGKRLVSGSEDGTIKVWD