WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000055129 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000055129 (Len=1284) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000055129, Len=1284): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MSIDLRTLLLSVCEQLAVNYRCLVQSFPKKIHDLRDLFINLLNESSLQRPLVIILDALEQLSEADEARKLWWLPAHLPRF 80
WD40-rpts
Query 81 VRIILSTLPNKHGILQKLRCLIHEEDNYIELIPRDRKMCSQVLKHQLLRVKRKVTSGQQIYVNNAFSKCTLPMFVNLTFR 160
WD40-rpts
Query 161 EVRHWRSHKDVDESSLCVTVHESIEQLFWSLEKKCGQKLVSRALGYITMAKMGLSEMELEDVLALDNSVMNELNENTRPS 240
WD40-rpts
Query 241 NPLRVPYLYIARLKEGLNGYLIERHVKNVTLLVWANRHLQLIAQKLYLQEDSNLREMHTILADYFLGVWSGGRRKAFCLE 320
WD40-rpts
Query 321 DPYLNGCLDLENRSLLEEEKHFMEQASFDRQAPDQPWVFQCNPLEPDIFFVNHRKMSELLYHLTRCGKTDDLLYGIIMNF 400
WD40-rpts
Query 401 SWLYTMIKIGQFDKVLADIELAYNYSQEKELKFLASTLRSIRNKVIAFPGSLSAELQQRLLPVVSSLPKLRHLLLECDKD 480
WD40-rpts
Query 481 GPKYCSIVPLHSSMDVTYSPERLPLASSHLHVTEILPTCNPSTVLTALENGSISTWDVETRQLLRQITTAQSVILGMKLS 560
WD40-rpts (_________________WD 1________________) (_________________WD
Query 561 SDEKYLVVATTNNTLLIYDNVNSCLLSEVEIKGTKHGSGSTYINGFTLSVNHALAWLEASKDVTVIDLLYGWPLYQFHCW 640
WD40-rpts 2________________) (_______________WD 3_______________) (_________
Query 641 YEVTCVQCSLDGVYAFCGQYLNNTTIFHLGSGEKICTVTSEFSGGFVKFLLILDTAQEMVMVDSEGSLSVWNTEDISNPQ 720
WD40-rpts _______WD 4________________) (__________________WD 5_________________)(_______
Query 721 LTEDFDCRKEDSEVVSIELSEDQSAILICKALSIELLDTGMWKVAEKFRARHNERFVSAVLSKNGDCIIATMENTPAVFF 800
WD40-rpts _____________WD 6____________________)(___________________WD 7__________________
Query 801 WRRDTGQCLASLQESSGTIVKLVKSSHHNMLLSLSTSGVLSIWDIDIITAMSNIDKTGKPIQSLVLPARGEIIYSLDGSD 880
WD40-rpts _) (_________________WD 8________________) (_________________WD 9___________
Query 881 CVHKWNFSSGFIEAVFKHEGIVEHCVLTSTGDLMVTSDDKSSQYVWHTSSGENLFRINGQRISQLLITHNDQFVVSLCEE 960
WD40-rpts _____)(__________________WD10_________________)(_________________WD11___________
Query 961 NASRVWRLATGHRVCNILTTLQNAFITSANTFVVGMTKSKVLAVSLWTGSITKKFCCEDGITIVNFKLIPDCPDVIVFIT 1040
WD40-rpts ______) (_______________WD12______________) (__________________WD13_________
Query 1041 SAETVNLWSLTDEVICRRVQLPSNFLKNLEDFEISPNGKLGIISRGDENINVLDLHSGKLRVVHASGVIWRQRLSRDGRY 1120
WD40-rpts ________) (_________________WD14________________)(_________________WD15____
Query 1121 LVYICFRNGEEEEENDAISSLIVMRLADGKNIGACSLYKTPTFLALSQRHLNIIVGFDDGSIGIYTVVDRVDAALKIKIA 1200
WD40-rpts _____________) (________________WD16________________)(_____________
Query 1201 TSNSRQIFNNATQTSRPKSNSYSFKVSVDCLWRESTEVFARDSPITVSDSSESNEATPSKKHNSCYDRVCAALESRSHSY 1280
WD40-rpts _____WD17__________________)
Query 1281 TPDN 1284
WD40-rpts
 17 WD40-repeats found in QUERY=ENSMUSP00000055129 (Len=1284): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 9 499-537 7.00 404.01 0.00022 20.0% 54.19 WD 2: Seg 13 541-579 8.62 470.66 2.8e-05 25.0% 53.39 WD 3: Seg 18 592-627 4.44 298.06 0.00598 12.5% 41.30 WD 4: Seg 21 631-668 6.45 381.24 0.00045 22.5% 55.28 WD 5: Seg 25 672-712 7.21 412.45 0.00017 25.0% 55.10 WD 6: Seg 29 713-758 5.52 342.75 0.00150 20.0% 41.30 WD 7: Seg 33 759-802 5.67 348.99 0.00123 17.5% 54.41 WD 8: Seg 37 806-844 9.00 486.39 1.7e-05 27.5% 57.57 WD 9: Seg 41 848-886 7.62 429.35 0.00010 10.0% 54.45 WD10: Seg 45 887-927 7.52 425.29 0.00012 15.0% 53.99 WD11: Seg 49 928-967 7.15 410.13 0.00018 15.0% 51.00 WD12: Seg 53 971-1005 4.70 308.65 0.00430 10.0% 50.13 WD13: Seg 57 1009-1049 5.24 331.11 0.00215 15.0% 55.03 WD14: Seg 61 1056-1094 7.15 410.08 0.00018 22.5% 50.26 WD15: Seg 65 1095-1134 6.13 368.04 0.00068 12.5% 42.58 WD16: Seg 69 1149-1186 6.44 380.80 0.00046 20.0% 51.36 WD17: Seg 73 1187-1228 5.53 342.89 0.00149 10.0% 27.70Multiple sequence alignment of 17 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 499-537 -SP---ERL-------PLASSHL-H--VTEILPTCNP-STV-LTALENGSISTWD WD 2 541-579 -RQ---LLR-------QITTAQS-V--ILGMKLSSDE-KYL-VVATTNNTLLIYD WD 3 592-627 KG------T-------KHGSGST-Y--INGFTLSVNH-A-L-AWLEASKDVTVID WD 4 631-668 -GW---PLY-------QFHCWYE----VTCVQCSLDG-VYA-FCGQYLNNTTIFH WD 5 672-712 -GE---KIC-------TVTSEFS-GGFVKFLLILDTA-QEM-VMVDSEGSLSVWN WD 6 713-758 TED---ISNPQLTEDFDCRKEDS-E--VVSIELSEDQ-SAI-LICK-ALSIELLD WD 7 759-802 TGMWKVAEK-------FRARHNE-R--FVSAVLSKNG-DCIIATMENTPAVFFWR WD 8 806-844 -GQ---CLA-------SLQESSG-T--IVKLVKSSHH-NML-LSLSTSGVLSIWD WD 9 848-886 -IT---AMS-------NIDKTGK-P--IQSLVLPARG-EII-YSLDGSDCVHKWN WD10 887-927 FSS--GFIE-------AVFKHEG-I--VEHCVLTSTG-DLM-VTSDDKSSQYVWH WD11 928-967 TSS---GEN-------LFRINGQ-R--ISQLLITHND-QFV-VSLCEENASRVWR WD12 971-1005 -GH---RVC-------NILTT-------LQNAFITSA-NTF-VVGMTKSKVLAVS WD13 1009-1049 -GS---ITK-------KFCCEDGIT--IVNFKLIPDCPDVI-VFITSAETVNLWS WD14 1056-1094 -CR---RVQ-------LPSNFLK-N--LEDFEISPNG-KLG-IISRGDENINVLD WD15 1095-1134 LHS---GKL-------RVVHASG-V--IWRQRLSRDG-RYL-VYICFRNGEEEEE WD16 1149-1186 -GK---NIG-------ACSLYKT----PTFLALSQRH-LNI-IVGFDDGSIGIYT WD17 1187-1228 VVD---RVD-----AALKIKIAT-S--NSRQIFNNAT-QTS-RPKSNSYSFKVSV WD40 Template TGE---CLR-------TLSGHTS-G--VTSVSFSPDG-KRL-VSGSEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |