Input parameters:

  Query = ENSMUSP00000053786 (Len=466)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000053786, Len=466):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEIHLPSVPLMKIFSYLDAYSLLQAAQVNKDWNELASSDVLWRRLCQKRWLFCDMVTLQLLGTETWKEFFVSRTWQEHAK 80  
WD40-rpts                                                                                     (

Query       81 SRAIREDFIYKEIPAEYGVRAHPCYISGRGLTRNGQGRPVVCMVTSVNRISTWDIQEGVLTWVSPVQQVGIKLLTTLPEM 160 
WD40-rpts      _________________________WD 1________________________)   (_________________WD 2_

Query      161 HIAVTVDIQSTIKLWDCQNSEALATSNLESPCKLLKAVFTKDGPMVLIGDISGNLYIFRIPDLHLISKLKVFQCSINQLN 240 
WD40-rpts      _______________)   (_________________WD 3_________________)   (_________________

Query      241 CSPQKKWIFLNRKHPHILPKVFYMSSLLRTSEFSAPVSTILKFSLCQRAFWTPRMEDRITLMSIRRTQKITKFITFDMKL 320 
WD40-rpts      WD 4________________)                                                           

Query      321 KEIQNKMTVKEQFVASFSVPDDMGRPKWFGVSGKDVIVCSTGSSLLLFNIKGVYLQTIMYYTDWILRLWMDPIYVIVTFN 400 
WD40-rpts                (_________________WD 5________________) (_________________WD 6________

Query      401 NGSLVVYAWEERCQQLNGCYQLQSRRRLPQQSFINKTLCDDMSIIRVMTTHSIPSFLMAYILTSDL 466 
WD40-rpts      _________)                                                        

6 WD40-repeats found in QUERY=ENSMUSP00000053786 (Len=466):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    80-134      3.11  243.21  0.03237       15.0%     32.82
  WD 2:  Seg  4   138-176      8.10  449.27  5.5e-05       22.5%     53.24
  WD 3:  Seg  8   180-219      6.80  395.66  0.00029       20.0%     52.77
  WD 4:  Seg 12   223-261      7.28  415.26  0.00016       12.5%     44.23
  WD 5:  Seg 21   331-369      5.69  349.68  0.00121       12.5%     36.70
  WD 6:  Seg 25   371-410      7.94  442.51  6.8e-05       15.0%     34.21

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   80-134    KSRAIREDFIYKEIPAEYGVRAHPCYIS-GRGLTRNGQGRPVVCMVTSVNRISTWD
   WD 2  138-176    -GVL---------------TWVSPVQQV-GIKLLTTLPEMHIAVTVDIQSTIKLWD
   WD 3  180-219    -SEA---------------LATSNLESPCKLLKAVFTKDGPMVLIGDISGNLYIFR
   WD 4  223-261    -LHL---------------ISKLKVFQC-SINQLNCSPQKKWIFLNRKHPHILPKV
   WD 5  331-369    -EQF---------------VASFSVPDD-MGRPKWFGVSGKDVIVCSTGSSLLLFN
   WD 6  371-410    KGVY---------------LQTIMYYTD-WILRLWMDPIYVIVTFNNGSLVVYAWE

   WD40 Template    TGEC---------------LRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD