Input parameters:

  Query = ENSMUSP00000052755 (Len=946)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000052755, Len=946):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKRRAGLGGSMRSVVGFLSQRGLHGDPLLTQDFQRRRLRGCRNLYKKDLLGHFGCVNAIEFSNNGGQWLVSGGDDRRVLL 80  
WD40-rpts                                                   (________________WD 1______________

Query       81 WHMEQAIHSRVKPIQLKGEHHSNIFCLAFNSGNTKVFSGGNDEQVILHDVESSETLDVFAHEDAVYGLSVSPVNDNIFAS 160 
WD40-rpts      _)        (_________________WD 2________________)  (_________________WD 3_______

Query      161 SSDDGRVLIWDIRESPHGEPFCLANYPSAFHSVMFNPVEPRLLATANSKEGVGLWDIRKPQSSLLRYGGNLSLQSAMSVR 240 
WD40-rpts      __________)(____________________WD 4___________________)(____________________WD 

Query      241 FNSNGTQLLALRRRLPPVLYDIHSRLPVFQFDNQGYFNSCTMKSCCFAGDRDQYILSGSDDFNLYMWKIPADPEAGGIGR 320 
WD40-rpts      5___________________)(_____________________WD 6____________________)            

Query      321 VVNGAFMVLKGHRSIVNQVRFNPHTYMICSSGVEKIIKIWSPYKQPGCTGDLDGRIEDDSRCLYTHEEYISLVLNSGSGL 400 
WD40-rpts            (_______________WD 7______________)    (_________________WD 8_____________

Query      401 SHDYANQSVQEDPRMMAFFDSLVRREIEGWSSDSDSDLSESTILQLHAGVSERSGYTDSESSASLPRSPPPTVDESADNA 480 
WD40-rpts      ____)                                         (_________________WD 9____________

Query      481 FHLGPLRVTTTNAVASTPATPTCEDASSRQQRLSALRRYQDKRLLALSNESDSEENVCEAELDTDLFPRPRSPSPEDGSS 560 
WD40-rpts      ____)                                                                           

Query      561 SPSSSTSSEDEEELNQRRATTRQRNAMRRRQKTARDERPTGPAKSTNTYIGEDNYDYPQIKVDDLSPSPDSSPERSASTL 640 
WD40-rpts                                                                                      

Query      641 DVQPSRAPPAANMESVERKIYKAYKWLRCSYISYSNNKDGETSLMAEEADEGRAGTSHKDNPTPSSSKEACLTATAQRDQ 720 
WD40-rpts                                                                                      

Query      721 DLPSEGCSSDACKEGTSAGNPNSGAGHEHSSHPWAEVPEGTSQDTNNSGPLEHSFETKKLNGKALSKALSSRAEEPPASP 800 
WD40-rpts                                                                                      

Query      801 GPKASGSTLNSASGNCPRTQSDDSEERSLDTVCANHNNGRLHPRPLHPHNNGQSSGELETVACSSPGHLDTDHDSPSLTG 880 
WD40-rpts                                                                                      

Query      881 TFLHKDCCGSEMACETPSAGMREDPPDPSGLDSSKVVHGQSGLKRHRIELEDTESENSSSEKKLKT 946 
WD40-rpts                                                                        

9 WD40-repeats found in QUERY=ENSMUSP00000052755 (Len=946):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    46-82       7.28  415.35  0.00016       32.5%     44.13
  WD 2:  Seg  7    91-129      6.96  401.99  0.00024       17.5%     47.38
  WD 3:  Seg 10   132-171      7.05  405.93  0.00021       27.5%     53.33
  WD 4:  Seg 14   172-216      5.85  356.41  0.00098       25.0%     46.71
  WD 5:  Seg 18   217-261      4.85  315.15  0.00352       17.5%     46.24
  WD 6:  Seg 22   262-308      5.00  321.01  0.00293       22.5%     49.67
  WD 7:  Seg 26   327-361      7.65  430.70  9.8e-05       30.0%     47.67
  WD 8:  Seg 29   366-405      2.92  235.24  0.04126       17.5%     33.46
  WD 9:  Seg 34   447-485      6.08  365.95  0.00073       20.0%     19.44

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   46-82     ----KK----DL-----L------GHFGCVNAIEFSN-N-GG-QWLVSGGDDRRVLLWH
   WD 2   91-129    -VKPIQ----LK-----G------EHHSNIFCLAFNS-G-NT-K-VFSGGNDEQVILHD
   WD 3  132-171    -SSETL----DV-----F------AHEDAVYGLSVSPVN-DN-I-FASSSDDGRVLIWD
   WD 4  172-216    IRESPHGEPFCL-----A------NYPSAFHSVMFNPVE-PR-L-LATANSKEGVGLWD
   WD 5  217-261    IRKPQS----SLLRYGGN------LSLQSAMSVRFNS-N-GT-Q-LLALRRRLPPVLYD
   WD 6  262-308    IHSRLP----VF-----QFDNQGYFNSCTMKSCCFAG-DRDQ-Y-ILSGSDDFNLYMWK
   WD 7  327-361    -----M----VL-----K------GHRSIVNQVRFNP-H-TY-M-ICSSGVEKIIKIWS
   WD 8  366-405    -PGCTG----DL-----D------GRIEDDSRCLYTH-E-EYIS-LVLNSGSGLSHDYA
   WD 9  447-485    -HAGVS----ER-----S------GYTDSESSASLPR-S-PP-P-TVDESADNAFHLGP

   WD40 Template    TGECLR----TL-----S------GHTSGVTSVSFSP-D-GK-R-LVSGSEDGTIKVWD