Input parameters:

  Query = ENSMUSP00000052465 (Len=899)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000052465, Len=899):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEMESAVEGRTASVLFAGFRALGLFSNEVPHVVRYSALKRRFYVTTCVGKSFHTYDVQKLSLVAVSNSVPQDICCMAAD 80  
WD40-rpts      (________________WD 1________________)                   (_________________WD 2_

Query       81 GRLVFAAYGNVFSAFARNKEIVHTFKGHKAEIHLLQPFGDHVISVDTDSVLIIWHIYSEEEYLQLTFDKSVFKISTILHP 160 
WD40-rpts      _______________)  (________________WD 3_______________)   (__________________WD 

Query      161 STYLNKVLLGSEQGSLQLWNIKSNKLLYTFPGWKVGVTALQQAPAVDVVAIGLVSGQVVIHNIKYDETLMKFHQDWGPIT 240 
WD40-rpts      4__________________)   (_________________WD 5________________)   (______________

Query      241 SISFRTDGHPIMAAGSPCGHIGLWDLEDKKLINQMRNAHSTAISGLTFLHREPLLVTNGADNALRIWIFDGPAGEGRLLR 320 
WD40-rpts      ___WD 6_________________)(___________________WD 7__________________)       (____

Query      321 FRMGHSASLTKIRYYGQNGQQILSASQDGTLQSFSTVHEKFNKSLGHGLVNKKIVKRKGLQNTMSVRLPPITQFAAEEAR 400 
WD40-rpts      _____________WD 8_________________)                                             

Query      401 QSDWDGIIACHQGKRSCSTWNYQRSTIGAYFLKPRGVKTNSNLTATAVDITSCGNFAIIGLSSGAVDVYNMQSGIHRGNF 480 
WD40-rpts                                      (________________WD 9________________)         (

Query      481 GDDKAHTGSVRGVAVDGLNQLVVTAGSERLLKFWNFKSKVLIHSLGLDSSPNMMLLHRDSGILGLAMDDFSIAVLDIETR 560 
WD40-rpts      _______________WD10_______________)  (_________________WD11________________)   (

Query      561 KIVREFSGHHGQINDMTFSPDGRWLISAAMDCSVRTWDLPSGCLIDCFLLDSAPLNVTMSPTGDFLATSHVDHLGIYLWS 640 
WD40-rpts      _________________WD12________________)   (_________________WD13________________)

Query      641 NISLYSVVSLRPLPPDYVPSIVMLPGTCQTQGMEDLEEKTEPSDEMIEYESPEQLSEQLVTLSLLPESRWKNLLNLDVIK 720 
WD40-rpts          (________________WD14________________)                                      

Query      721 KKNKPKEPPKVPQSAPFFIPTVPGLVPRFAVPEPSSDPQQSKVVNLGILAQKSNFYLKLEEGLLNNQYEAALNLLKELGP 800 
WD40-rpts                                                                                      

Query      801 SGIETELRNLSPDDGGSVEVMRSFLSMIGMMLDRKRDFELAQAYLALFLKLHLRTLPSEPALLEELVKLSSQVEKDWTHL 880 
WD40-rpts                                                                                      

Query      881 QSLFNQSMCVLNYIKSAFL 899 
WD40-rpts                         

14 WD40-repeats found in QUERY=ENSMUSP00000052465 (Len=899):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       4.35  294.50  0.00667       20.0%     31.44
  WD 2:  Seg  6    58-96       3.88  274.78  0.01227        5.0%     50.56
  WD 3:  Seg 10    99-135      5.93  359.45  0.00089       22.5%     53.11
  WD 4:  Seg 14   139-180      5.14  327.09  0.00243       22.5%     58.51
  WD 5:  Seg 18   184-222      7.33  417.41  0.00015       22.5%     58.79
  WD 6:  Seg 22   226-265      7.18  411.43  0.00018       35.0%     53.70
  WD 7:  Seg 26   266-308      6.81  396.04  0.00029       15.0%     54.44
  WD 8:  Seg 30   316-355      7.23  413.23  0.00017       30.0%     56.37
  WD 9:  Seg 41   433-470      6.61  387.77  0.00037       15.0%     50.33
  WD10:  Seg 46   480-515      6.85  397.64  0.00027       20.0%     47.09
  WD11:  Seg 49   518-556      5.86  356.75  0.00097       22.5%     54.71
  WD12:  Seg 53   560-598      9.66  513.81  7.4e-06       35.0%     58.20
  WD13:  Seg 57   602-640      4.65  306.76  0.00456       25.0%     57.12
  WD14:  Seg 61   645-682      3.33  252.28  0.02452       20.0%     37.04

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     MAE---MESAVEGRTASVLFAG-F---RALG---LFSNEVPHV-VRYSA
   WD 2   58-96     VQK---LSLVAVSNSVPQDICC-M---AADGRL-VFAAY-GNV-FSAFA
   WD 3   99-135    -KE---IVHTFKGHKAEIHL---L---QPFGDH-VISVDTDSV-LIIWH
   WD 4  139-180    -EE---EYLQLTFDKSVFKIST-ILHPSTYLNK-VLLGSEQGS-LQLWN
   WD 5  184-222    -NK---LLYTFPGWKVGVTALQ-Q---APAVDV-VAIGLVSGQ-VVIHN
   WD 6  226-265    -DE---TLMKFHQDWGPITSIS-F---RTDGHPIMAAGSPCGH-IGLWD
   WD 7  266-308    LEDKKLINQMRNAHSTAISGLT-F---LHREPL-LVTNGADNA-LRIWI
   WD 8  316-355    -GR---LLRFRMGHSASLTKIRYY---GQNGQQ-ILSASQDGT-LQSFS
   WD 9  433-470    --K---PRGVKTNSNLTATAVD-I---TSCGNF-AIIGLSSGA-VDVYN
   WD10  480-515    FGD-------DKAHTGSVRGVA-V---DGLNQL-VVTAGSERL-LKFWN
   WD11  518-556    -SK---VLIHSLGLDSSPNMML-L---HRDSGI-LGLAMDDFS-IAVLD
   WD12  560-598    -RK---IVREFSGHHGQINDMT-F---SPDGRW-LISAAMDCS-VRTWD
   WD13  602-640    -GC---LIDCFLLD-SAPLNVT-M---SPTGDF-LATSHVDHLGIYLWS
   WD14  645-682    -YS---VVSLRPLPPDYVPSIV-M---LP-GTC-QTQGMEDLE-EKTEP

   WD40 Template    TGE---CLRTLSGHTSGVTSVS-F---SPDGKR-LVSGSEDGT-IKVWD