Input parameters:

  Query = ENSMUSP00000052452 (Len=747)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000052452, Len=747):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTLTRCHHLKQIAQECLSSLLVKVQSRTQLLLPRASARAESGKSWHSTHSLVGDKNIVLMGPPGSGKTTVGRILGDKLG 80  
WD40-rpts                                                                                      

Query       81 CCVIDVDSDVLEKAWNMSASEKLQDVGNERFLEEEGKTVLNLSASGSVISLSGSNPMHDASMWHLKKNGIVVYLDVPLTD 160 
WD40-rpts                                                                                      

Query      161 IISRLKSMRIDRIVGQNTGASLRDSLKHVRLYYKKWYDARVFCESGASAEEVADKVLDVVKRYQDVDSETFISTRHVCLK 240 
WD40-rpts                                                                                      

Query      241 DHDKKFPPKYFSEAVVEGLASDGGLFVPEKEFPKLSPGEWNNLIGATYIERAQVLLERCIHPADIPAAKLGEMIETAYGE 320 
WD40-rpts                                                                                      

Query      321 NFACSKVAPVRHLSGNQFILELFYGPTGSFKDLSLQLMPHIFAYCIPPGCNYVILVATSGDTGSAVLNGFSHLNKNDKER 400 
WD40-rpts                                                                                      

Query      401 IAVVTFFPENGVSDFQKAEIIGSQRENGWAIGVRSDFDFCQTAIRKIFNDSDFTGFLAVEYGTILSSANSINWARLLPQI 480 
WD40-rpts                                                                                      

Query      481 VYHASAYLELVNQRFISFGSPVDVCVPTGNFGNVLAAVYAKMMGIPIRKFICASNQNHVLTDFIKTGHYDLRNRKLAQTF 560 
WD40-rpts                                                (_____________________________________

Query      561 SPSIDILKSSNLERHLYLMANKDGQLMANLYHQLESQLHFRIEKMLVEKLQQEFVADWCSEGECLAAISTTYNASGYILD 640 
WD40-rpts      ______WD 1__________________________________________)                           

Query      641 PHTAVAKVVADKMQDKSCPVLIASTAHYSKFAPAIMQALGIKELNQTSSSQLYLLSSYNALPPPHEALLERMKQKEKMDY 720 
WD40-rpts                                                                                      

Query      721 QVCVADVDVLKSHAEKLIQNWFVRKSE 747 
WD40-rpts                                 

1 WD40-repeats found in QUERY=ENSMUSP00000052452 (Len=747):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   523-613      3.09  242.41  0.03317       20.0%      1.34

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  523-613    MGIPIRKFICASNQNHVLTDFIKTGHYDLRNRKLAQTFSPSIDILKSSNLERHLYLMANKDGQLMANLYHQLESQLHFRIEKMLVEKLQQE

   WD40 Template    TGECLRTLSGHTSGVT------------------SVSFSPDGKRLVSGS----------ED--------------GTIKVW---------D