Input parameters:

  Query = ENSMUSP00000050662 (Len=682)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000050662, Len=682):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSVEDCGNVELPPWSYSVPSLNSEQEDPSDPASKIASLLLAKLADYVVPGCQTVLSPTASEPDTTLTKTSPKNSLKGDKD 80  
WD40-rpts                                                                                      

Query       81 PGEESEAVDGKLSIFIHKREDQSSHEVLQPLLSSSEGRPFRLGTGANMEKVVKMDRDMTKGGCCEVITEEASAALRKATK 160 
WD40-rpts                                                                                      

Query      161 WAQSGLIVSVGPPVESINPETVSGLSTGDKKKTAQTSICRERNSELARTDPVRPFISGHVANSMAAEVIALLHSLLMAPE 240 
WD40-rpts                                                                                      

Query      241 SNAAQIWTTTAEKVLSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGSEVQVLGRGI 320 
WD40-rpts                                                                                      

Query      321 SGSIGVVASINEQEGIATVRFPPVDCRRTSQAADTLTIPLSRLCVPRSEALPLHKLSITEKVVQAVQSMLLPQEGSLSIH 400 
WD40-rpts                                                                           (__________

Query      401 TSLPATGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEMQCERLRM 480 
WD40-rpts      ______________________________________________WD 1______________________________

Query      481 LYRDCARPPPPPLQADRRQPKEITWSPSRVFPPVRACMFSSHLTSVTFLADPSAGGGLPRGTFIYATSPLPVQAPSFYWE 560 
WD40-rpts      _________________________)                                                      

Query      561 IEIVSYGDTDDDTGPIVSFGFATEAEKRDGAWTNPVGTCLFHNNGRAVHYNGSSLLQWKSVRLDVTLSPGDVAGIGWERT 640 
WD40-rpts                                                                                      

Query      641 EGTPPPPGQPAKGRVYFTYCGQRLTPYLEDVSGGMWPVVHIQ 682 
WD40-rpts                                                

1 WD40-repeats found in QUERY=ENSMUSP00000050662 (Len=682):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  8   390-506      2.80  230.25  0.04801       22.5%     -9.85

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  390-506    LLPQEGSLSIHTSLPATGDGSAPVMAVVRLLAEIRTRACLVMAQLLEDSLFCEEFIQQCPAAVEVLNLVAQECSAGERLAVVEMQCERLRMLYRDCARPPPPPLQADRRQPKEITWS

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP------------------------DG---------KRL------------VSGSED-----------------------GTI---------KVWD