Input parameters:

  Query = ENSMUSP00000049581 (Len=887)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000049581, Len=887):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGQPAASSGLGLPDYRSGVSFHDQADLPDTEDFQAGLYVAESPQPQEAEAVSLGQLSDKSSTSEASQGEERGGDDGGAP 80  
WD40-rpts                                                                                      

Query       81 ADKNSVKSGDSSQDLKQSEGSEEEEEEEGCVVLEEDQEDEVTGTSELTLSDTMLSMETVVAPGDGRDREEEEEPLTEQTE 160 
WD40-rpts                                                                                      

Query      161 GKEQKILLDTACKMVRWLSAKLGPTVASRHVARNLLRLLTSCYVGPTRQQFTVSSDDTPPLNAGNIYQKRPVLGDIVSGP 240 
WD40-rpts                                                                                      

Query      241 VLSCLLHIAYLYGEPVLTYQYLPYISYLVAPGSNSNPSRLNSRKEAGLLAAVTLTQKIIVYLSDTTLMDILPRISHEVLL 320 
WD40-rpts                                                                                      

Query      321 PVLGFLTSFVTGFPSGAQARTVLCVKTISLIALICLRIGQEMVQQHLSEPVATFFQVFSHLHELRQQDLPLDPKGCTEGQ 400 
WD40-rpts                                                                                      

Query      401 LPEATFSDGQRRPVDPTLLEELQKVFTLEMAYTIYVPFSCLLGDIIRKIIPNHELVGELAGLYLESMSPSSRNPASMEPT 480 
WD40-rpts                                                     (__________________WD 1__________

Query      481 MASAGPEWDPQSGSCLQDDGHSGTFGSVLVGNRIQIPDSQPQSPGPLGSLSGVGSSGGLSNRNEDNALKRELPRSAHGLS 560 
WD40-rpts      ________)                                        (_________________WD 2_________

Query      561 GNWLAYWQYEIGVSQQDAHFHFHQIRLQSFPGHTGAVKCVAALSSEDFFLSGSKDRTVRLWPLYNYGDGTNETASRLIYA 640 
WD40-rpts      _______)               (_________________WD 3________________)          (_______

Query      641 QHRKSVFYVGQLEAPQYVVSCDGAVHVWDPFTGKTLRTVDPSDSRVPLTAVAVMPAPHTSITMASSDSTLRFVDCRKPGL 720 
WD40-rpts      _________WD 4_______________)   (__________________WD 5__________________)      

Query      721 QHEFRLGGGLNPGLVRSLAVSPSGRSVVAGFSSGFMVLLDTRTGLVLRGWPAHEGDILQIKAVEGSVLISSSSDHSLTVW 800 
WD40-rpts       (_________________WD 6________________)   (________________WD 7________________

Query      801 KELEQKPTHHYKSASDPIHTFDLYGSEVVTGTVANKIGVCSLLEPPSQATTKLSSENFRGTLTSLALLPTKRHLLLGSDN 880 
WD40-rpts      )(_________________WD 8_________________)(____________________WD 9______________

Query      881 GIIRLLA 887 
WD40-rpts      ______)

9 WD40-repeats found in QUERY=ENSMUSP00000049581 (Len=887):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   448-489      7.73  434.07  8.8e-05       22.5%     21.50
  WD 2:  Seg 16   530-568      6.23  371.83  0.00061       10.0%     42.00
  WD 3:  Seg 21   584-622      8.79  477.80  2.3e-05       30.0%     49.22
  WD 4:  Seg 25   633-669      5.80  354.40  0.00104       25.0%     44.17
  WD 5:  Seg 29   673-714      6.43  380.17  0.00047       32.5%     53.56
  WD 6:  Seg 33   722-760      7.37  419.24  0.00014       25.0%     45.76
  WD 7:  Seg 37   764-801      7.67  431.29  9.6e-05       27.5%     51.55
  WD 8:  Seg 41   802-841      6.01  362.93  0.00080       20.0%     44.58
  WD 9:  Seg 45   842-887      6.99  403.42  0.00023       22.5%     40.30

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  448-489    KII------PNHELVGELAGL--YLESMSPSS-RNPASMEPTMASAGPEWD
   WD 2  530-568    -LS------GVGSSGGLSNRN--EDNALKREL-PRSAH--GLSGNWLAYWQ
   WD 3  584-622    -QI------RLQSFPGHTGAV--KCVAALSSE-DFFLS--GSKDRTVRLWP
   WD 4  633-669    -TA------SRLIYAQHRKSV--FYVGQLEAP-QYVVS--C--DGAVHVWD
   WD 5  673-714    -GK------TLRTVDPSDSRVPLTAVAVMPAPHTSITM--ASSDSTLRFVD
   WD 6  722-760    -HE------FRLGGGLNPGLV--RSLAVSPSG-RSVVA--GFSSGFMVLLD
   WD 7  764-801    -GL------VLRGWPAHEGDI--LQIK-AVEG-SVLIS--SSSDHSLTVWK
   WD 8  802-841    ELE------QKPTHHYKSASD--PIHTFDLYG-SEVVT--GTVANKIGVCS
   WD 9  842-887    LLEPPSQATTKLSSENFRGTL--TSLALLPTK-RHLLL--GSDNGIIRLLA

   WD40 Template    TGE------CLRTLSGHTSGV--TSVSFSPDG-KRLVS--GSEDGTIKVWD