WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: ENSMUSP00000049335 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000049335 (Len=1749) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000049335, Len=1749): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MQLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTK 80
WD40-rpts (________________WD 1_______________) (_________________WD 2___
Query 81 IAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAEYVIVFGLAEGKVRLANTKTNKSSTIYGTESYVVALTT 160
WD40-rpts _____________)(____________________WD 3___________________) (_________________W
Query 161 NCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDPQE 240
WD40-rpts D 4________________) (________________WD 5_______________) (__________
Query 241 REFTTAAASPGGQSVVLGSYDRLRVFNWSPRRSIWEEAKPKEIANLYTVTALAWKRDGSRLCAGTLCGGVEQFDCCLRRS 320
WD40-rpts ______WD 6________________)(_____________________WD 7____________________)
Query 321 IYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSDTLLLGDLNTNRLSEIAWQGSGGNEK 400
WD40-rpts
Query 401 YFFENENVCMIFNAGELTLVEYGSNDSLGSVRTEFMNPHLISVRINERCQRGMEDNKKLAYLVDIKTIAIVDLIGGYNIG 480
WD40-rpts (_______________________WD 8______________________) (_____
Query 481 TISHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYVQWVPGSDVLVAQNRNSLCVWYNIEAPERVTM 560
WD40-rpts ____________WD 9________________)
Query 561 SSIRGDVVGLERGGGKTEVMVTEGVTTVAYTLDEGLIEFGTAIDDGNYTRATAFLETLEMTPETEAMWKTLSKLALEARQ 640
WD40-rpts
Query 641 LHTAERCFSALGHVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMDMYQELHR 720
WD40-rpts
Query 721 WEECIAVAEAKGHPALEKLRRDYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPAKAARLVLTREELLANTELVE 800
WD40-rpts
Query 801 HITTALIKGELYERAGDLFEKIRNPQRALECYCKGNAFMKAVELARLAFPVEVVRLEEAWGDHLVQQKQLDAAINHYIEA 880
WD40-rpts
Query 881 RCSIKAIEAALGARQWKKAIYILDLQDRNTASKYYPRVAQHYASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKL 960
WD40-rpts
Query 961 AMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTVEEPDLAITMFKKHKLYDDMIRLVGKHHPDLLSDTHLHLGKELE 1040
WD40-rpts
Query 1041 AEGRLQEAEYHYLEAQEWKATVNMYRSSGLWEEAYRVAKAHGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEATIDHA 1120
WD40-rpts
Query 1121 ADNCSFEFAFELSRLAFKHKAPEIHLKYAMYLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWEAAQRVAEAHDPDSVA 1200
WD40-rpts
Query 1201 EVLVGQARGALEEKDFQKAEGLLLRAQRPGLALNYYKEAGLWSDALRICKDYVPGQLEALQEEYEREATKKGGRGVEGLV 1280
WD40-rpts
Query 1281 EQARQWEQAGEYSRAVDCYLKVRDSGSSGLMEKCWMKAAELSIKFLPPQRSLEVVRVVGPQLIGIGKHSAAAELYLNLDL 1360
WD40-rpts
Query 1361 VKEAIDAFIEGEEWNKAKRVAKELDPRYEDYVDQHYKEFLKNQGKVDSLVGVDVVAALDLYVEQGQWDKCIETATKQNYK 1440
WD40-rpts
Query 1441 ILHKYVALYATHLIREGGYAQALALYVQHGAPANPQNFNIYKRIFTDMVSSPGTNNAEAYHSWADLRDVLFNLCENLVKS 1520
WD40-rpts
Query 1521 SEANSAAHEEFEMMLLISHYYATRSAAQSIKQLETVAARLSVSLLRHTQLLPADKAFYEAGTAAKEVGWENMAFIFLNRF 1600
WD40-rpts
Query 1601 LDLTDAIEEGTLDALDHSDFQDTDIPFEVPLPAKQHVPEAQREEVRDWVLTVSMDQRLEQVLPRDERGVYEASLVAASTG 1680
WD40-rpts
Query 1681 VRALPCLITGYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHSPVCQDVLKFISQWCGGLPSTSFSFQ 1749
WD40-rpts
 9 WD40-repeats found in QUERY=ENSMUSP00000049335 (Len=1749): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 8-44 5.94 359.89 0.00088 17.5% 45.30 WD 2: Seg 5 56-94 6.66 389.88 0.00035 22.5% 46.03 WD 3: Seg 8 95-139 4.05 282.02 0.00981 25.0% 48.22 WD 4: Seg 12 142-180 6.59 386.68 0.00038 30.0% 54.10 WD 5: Seg 15 187-223 4.12 284.82 0.00900 17.5% 45.20 WD 6: Seg 19 230-267 4.08 283.34 0.00942 22.5% 44.98 WD 7: Seg 23 268-314 5.98 361.78 0.00083 25.0% 46.87 WD 8: Seg 37 422-472 3.89 275.15 0.01213 20.0% 45.99 WD 9: Seg 41 475-513 4.84 314.79 0.00356 17.5% 52.51Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 8-44 T---------------------LLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYD WD 2 56-94 -K-------P-----------ADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYK WD 3 95-139 IG-------E-----DWGDKKVICNKFIQTSAVTCLQW-PAEYVIVFGLAEGKVRLAN WD 4 142-180 -T-------N-----------KSSTIYGTESYVVALTTNCSGKGILSGHADGTIVRYF WD 5 187-223 -G-------E-----------SQGKLVNHPCPPYALAWATNS--IVAAGCDRRIVAYG WD 6 230-267 -Q-------T-----------FDYSRDPQEREFTTAAASPGGQSVVLGSYD-RLRVFN WD 7 268-314 WSPRRSIWEE-----------AKPKEIANLYTVTALAWKRDGSRLCAGTLCGGVEQFD WD 8 422-472 YG-------SNDSLGSVRTEFMNPHLISVRINERCQRGMEDNKKLAYLVDIKTIAIVD WD 9 475-513 -G-------G-----------YNIGTISHESRVDWLELNETGHKLLFRDRKLRLHLYD WD40 Template TG-------E-----------CLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD |
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