Input parameters:

  Query = ENSMUSP00000049258 (Len=1300)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000049258, Len=1300):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKVVPEKNAVRILWGRERGTRAMGAQRLLQELVEDKTRWMKWEGKRVELPDSPRSTFLLAFSPDRTLLASTHVNHNIYIT 80  
WD40-rpts                                            (___________________WD 1__________________

Query       81 EVKTGKCVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWDLHGGSESWFTDSNNAIASLAFHPTAQLLLIATANEI 160 
WD40-rpts      )   (_________________WD 2_________________)  (________________WD 3_____________

Query      161 HFWDWSRREPFAVVKTASEMERVRLVRFDPLGHYLLTAIVNPSNQQGDDEPEIPIDGTELSHYRQRALLQSQPVRRTPLL 240 
WD40-rpts      ___)(___________________WD 4___________________)                                

Query      241 HNFLHMLSSRSSGIQVGEQSTVQDSATPSPPPPPPQPSTERPRTSAYIRLRQRVSYPTTVECCQHPGILCLCSRCAGTRV 320 
WD40-rpts                                                                      (_______________

Query      321 PSLLPHQDSVPPASARATTPSFSFVQTEPFHPPEQASSTQQDQGLLNRPSAFSTVQSSTAGNTLRNLSLGPTRRSLGGPL 400 
WD40-rpts      __WD 5________________)                                              (__________

Query      401 SSHPSRYHRELAPGLTGSEWTRTVLTLNSRSEVESMPPPRTSASSVSLLSVLRQQEGGSQASVYTSATEGRGFPSSGLAT 480 
WD40-rpts      _______WD 6________________)                                                    

Query      481 ESDGGNGSSQNNSGSIRHELQCDLRRFFLEYDRLQELDQSLSGETPQTQQAQEMLNNNIESERPGPSHLPTPHSSENNSN 560 
WD40-rpts                                                                                      

Query      561 LSRGHLNRCRACHNLLTFNNDTLRWERTTPNYSSGEASSSWHVSTTFEGMPPSGNQLPPLERTEGQMPSSSRLELSSSAS 640 
WD40-rpts                                                                                      

Query      641 SQEERTVGVAFNQETGHWERIYTQSSRSGTVSQEALHQDMPEESSEEDSLRRRLLESSLISLSRYDGAGSREHPIYPDPA 720 
WD40-rpts                                                                                      

Query      721 RLSPAAYYAQRMIQYLSRRDSIRQRSMRYQQNRLRSSTSSSSSDNQGPSVEGTDLEFEDFEDNGDRSRHRAPRNARMSAP 800 
WD40-rpts                                                                                      

Query      801 SLGRFVPRRFLLPEYLPYAGIFHERGQPGLATHSSVNRVLAGAVIGDGQSAVASNIANTTYRLQWWDFTKFDLPEISNAS 880 
WD40-rpts                                                                                      

Query      881 VNVLVQNCKIYNDASCDISADGQLLAAFIPSSQRGFPDEGILAVYSLAPHNLGEMLYTKRFGPNAISVSLSPMGRYVMVG 960 
WD40-rpts                                                                                      

Query      961 LASRRILLHPSTEHMVAQVFRLQQAHGGETSMRRVFNVLYPMPADQRRHVSINSARWLPEPGLGLAYGTNKGDLVICRPE 1040
WD40-rpts                                                                                      

Query     1041 ALNSGIEYYWDQLSETVFTVHSSSRSSERPGTSRATWRTDRDMGLMNAIGLQPRNPTTSVTSQGTQTLALQLQNAETQTE 1120
WD40-rpts                                                                                      

Query     1121 REEEEPGAASSGPGEGEGSEYGGSGEDALSRIQRLMAEGGMTAVVQREQSTTMASMGGFGNNIIVSHRIHRSSQTGTESG 1200
WD40-rpts                                                                                      

Query     1201 AARTSSPQPSTSRGLPSEPGQLAERALSPRTASWDQPSTSGRELPQPALSSSSPVPIPVPLASNEGPTMHCNVTNNSHLP 1280
WD40-rpts                                                                                      

Query     1281 EGDGSNRGEAAGPSGEPQNR 1300
WD40-rpts                          

6 WD40-repeats found in QUERY=ENSMUSP00000049258 (Len=1300):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    39-81       5.83  355.41  0.00101       20.0%     48.86
  WD 2:  Seg  8    85-124      8.07  447.83  5.7e-05       35.0%     51.05
  WD 3:  Seg 12   127-164      6.06  365.09  0.00075       20.0%     50.17
  WD 4:  Seg 16   165-208      5.41  338.00  0.00173       17.5%     52.43
  WD 5:  Seg 26   305-343      3.32  251.87  0.02483       15.0%     -2.69
  WD 6:  Seg 29   390-428      3.49  258.94  0.01999       20.0%     -7.38

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-81     WMK-WEGKRVELPDSPRSTFLLAFSPD-RTLLASTHVNHNIYITE
   WD 2   85-124    -GK----CVHSLIGHRRTPWCVTFHPTISGLIASGCLDGEVRIWD
   WD 3  127-164    -GG----SESWFTDSNNAIASLAFHPT-AQLLLIATAN-EIHFWD
   WD 4  165-208    WSRREPFAVVKTASEMERVRLVRFDPL-GHYLLTAIVNPSNQQGD
   WD 5  305-343    -HP----GILCLCSRCAGTRVPSLLPH-QDSVPPASARATTPSFS
   WD 6  390-428    -GP----TRRSLGGPLSSHPSRYHREL-APGLTGSEWTRTVLTLN

   WD40 Template    TGE----CLRTLSGHTSGVTSVSFSPD-GKRLVSGSEDGTIKVWD