Input parameters:

  Query = ENSMUSP00000049248 (Len=1547)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000049248, Len=1547):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRDRSTPQRINFNLRG 80  
WD40-rpts                            (________________WD 1_______________)(____________________

Query       81 HNSEVVLVRWNEPYQKLATCDADGGIFVWIQYEGRWSVELVNDRGAQVSDFTWSHDGTQALISYRDGFVLVGSVSGQRHW 160 
WD40-rpts      ___WD 2______________________)   (_________________WD 3_________________)   (___

Query      161 SSEINLESQITCGIWTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHESDGILSMSWNYPIFLVEDSSESDTDSDDYSPP 240 
WD40-rpts      ______________WD 4________________)   (_________________WD 5________________)   

Query      241 QDGPAAYPIPVQNTKPLLTVSFTSGDISLMNNYDDLSPTVIRSGLKEVVAQWCTQGDLLAVAGMEQQAQLSELPNGPLLK 320 
WD40-rpts                                    (__________________WD 6__________________)        

Query      321 SAMVKFYNVRGEHIFTLDTLVQRPIISICWGHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIASTLREDKDVNKLTL 400 
WD40-rpts                                                                                      

Query      401 PPRLCSYLSTAFIPTIKPPIPDPNNMRDFVSYPSAGNERLHCTMKRTEDDPEVGGPCYTLYLEYLGGLVPILKGRRISKL 480 
WD40-rpts                                                                                      

Query      481 RPEFVIMDPRTDSKSDEIYGNSLISTVIDSCNCSDSSDIELSDDWAAKKSPKISRSSKSPKLPRISIEARKSPKLPRAAQ 560 
WD40-rpts                                                                                      

Query      561 EISRSPRLPMRKPSMGSPSLTRREFPFEDITQHNYLAQVTSNIWGTKFKIVGLAAFLPTNLGAVIYKTSLLHLQPRQMTI 640 
WD40-rpts                                                                                      

Query      641 YLPEVRKISMDYINLPVFNPNVFSEDEDDLPVTGASGVPENNPPCTVNIPIAPIHSSAQALSPTQSIGLVQSLLANQNVQ 720 
WD40-rpts                                                                                      

Query      721 LDVLTNQTTAVGSAEHAGDAATQYPVSSRYSNPGQVIFGGVEMGRIIQNPPQLPLPPPPPPPPQAPMQLSAVDHGDRDHE 800 
WD40-rpts                                                                                      

Query      801 HLQKSAKALRPVPQLAAEGDAVVFSAPQEVQVAKMNPPPPYPGTIPAAPTTAAPPPPLPPPQPPVDVCLKKGDFSLYPTA 880 
WD40-rpts                                                                                      

Query      881 AHYQPPLGYERITTFDSSGNVEEVCRPRTRMLCSQNTYTLPGPGSSATLRLTATEKKVPQPCTSATLNRLTVPRYSIPTG 960 
WD40-rpts                                                                                      

Query      961 DPPPYPEIASQLAQGRSAAQRLDNSLIHATLRRNNREVALKMAQLADSSRAPLQPLAKPKGGAAGAVAQLPARPPPALYT 1040
WD40-rpts                                                                                      

Query     1041 CSQCSGAGPSSQSGAALAHAISTSPLASQSSYNLLSPPDTSRDRTDYVNSAFTEDEALSQHCQLEKPLRHPPLPEAAVTM 1120
WD40-rpts                                                                                      

Query     1121 KRPPPYQWDPMLGEDVWVPQERTAQPTVPNPLKLSPLMLGQGQHLDVARVPFVPPKSPSSPTATFPTGYGMGMPYPGSYN 1200
WD40-rpts                                                                                      

Query     1201 NPSLPGVQAPCSPKDALSQAQFAQQESAVVLQPAYPPSLSYCTLPPTYPGSSTCSSVQLPPIALHPWNSYSTCPPMQNTQ 1280
WD40-rpts                                                                                      

Query     1281 GTLPPKPHLVVEKPLVSPPPAELQSHMGTEVMVETADNFQEVLSLTESPVPQRTEKFGKKNRKRLDSRAEEGSVQAITEG 1360
WD40-rpts                                                                                      

Query     1361 KVKKDARTLSDFNSLISSPRLGREKKKVKSQKDQLKSKKLNKTNEFQDSSESEPELFISGDELMNQSQGSKKGWKSKRSL 1440
WD40-rpts                                                                                      

Query     1441 RTASELEEFKCRKASEKEDGRLGSQGFVYVMANKQPLWNEATQVYQLDFGGRVTQESAKNFQIELEGRQVMQFGRIDGNA 1520
WD40-rpts                                                                                      

Query     1521 YILDFQYPFSAVQAFAVALANVTQRLK 1547
WD40-rpts                                 

6 WD40-repeats found in QUERY=ENSMUSP00000049248 (Len=1547):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    23-59       2.78  229.46  0.04918       20.0%     36.16
  WD 2:  Seg  5    60-110      6.93  400.83  0.00025       35.0%     42.57
  WD 3:  Seg  8   114-153      5.01  321.67  0.00288       22.5%     59.10
  WD 4:  Seg 12   157-195      6.08  365.87  0.00073       22.5%     51.91
  WD 5:  Seg 16   199-237      4.71  309.12  0.00424       17.5%     31.03
  WD 6:  Seg 21   271-312      3.52  260.21  0.01922        7.5%     39.36

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-59     KG--RVPK-------------SEKEKP-VCRRRYYEEG-WLATGNGRGVVGVTF
   WD 2   60-110    TS--SHCRRDRSTPQRINFNLRGHNSE-VVLVRWNEPYQKLATCDADGGIFVWI
   WD 3  114-153    -G--RWSV-----------ELVNDRGAQVSDFTWSHDGTQALISYRDGFVLVGS
   WD 4  157-195    -Q--RHWS-----------SEINLESQ-ITCGIWTPDDQQVLFGTADGQVIVMD
   WD 5  199-237    -R--MLAH-----------VLLHESDG-ILSMSWNYPIFLVEDSSESDTDSDDY
   WD 6  271-312    NNYDDLSP-----------TVIRSGLK-EVVAQWCTQGDLLAVAGMEQQAQLSE

   WD40 Template    TG--ECLR-----------TLSGHTSG-VTSVSFSPDGKRLVSGSEDGTIKVWD