Input parameters:

  Query = ENSMUSP00000048377 (Len=686)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000048377, Len=686):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHESRGTEALCWAGGQRLFSAGLN 80  
WD40-rpts      (___________________WD 1___________________)(___________________WD 2____________

Query       81 GEILEYDLQALNIKYTLDAFGGPIWSMTASPSGSQLLVGCEDGSVKLFEVTPEKIQFARNFDRQKSRILSLCWHPAGTHV 160 
WD40-rpts      ______)   (_________________WD 3________________)(___________________WD 4_______

Query      161 AAGSLDYISVFDVKSGSIIRKMVLDRQHLGVTKSRCIVWGVAFLSDGTVISVDSVGKVQLWDSATGTLVKSHLVANADVQ 240 
WD40-rpts      ___________)            (________________WD 5________________)   (______________

Query      241 SIAVADQEDSFVVGTAEGTVFHFQLVSMTSNSSEKQWVRTKPFQHHTHDVRAVAHSPTALISGGTDTHLVIRPLMERVEV 320 
WD40-rpts      ___WD 6________________)            (________________WD 7_______________)(______

Query      321 KNYDAALRKITFPHRRLISCSKRRQLLLFQFAHHLELWRLGSTSATGKNGDTLPLSKNADHLLHLKTKGPENIICSCVSP 400 
WD40-rpts      __________WD 8_______________)(___________WD 9__________)(__________________WD10

Query      401 CGSWIAYSTASRFFLYRLKYERDNISLQRVSKLPSFLRSALHILFSEDSTKLLVASNQGSLHIVHLSEGSFKHLHTFQPQ 480 
WD40-rpts      _________________)        (_________________WD11________________)(______________

Query      481 SGTVEAMCLLAVSPDGNWLAASGTSAGVHVYDLHHLKLHCTVPAYNFPVTALAIAPNTNNLVIAHSDQQVFEFSIPEKQY 560 
WD40-rpts      _______WD12____________________)   (_________________WD13________________)      

Query      561 TEWSRSLQKQGFHQLWLQRDTPITHISFHPKRPMHILLHDAYMFCIIDKSLPLPNEKTVLYNPLPPKNESDVFLRRTTHG 640 
WD40-rpts             (__________________WD14_________________)                                

Query      641 FKMSKIYKPLLFMDLLDERTLVAVERPLDDIIAQLPPPIKKKKFGT 686 
WD40-rpts                                                    

14 WD40-repeats found in QUERY=ENSMUSP00000048377 (Len=686):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       8.08  448.32  5.6e-05       27.5%     56.84
  WD 2:  Seg  5    45-87       7.70  432.72  9.2e-05       27.5%     56.75
  WD 3:  Seg  9    91-129      8.94  484.12  1.9e-05       30.0%     58.77
  WD 4:  Seg 13   130-172      6.88  398.76  0.00026       27.5%     54.55
  WD 5:  Seg 18   185-222      6.06  365.10  0.00075       25.0%     40.83
  WD 6:  Seg 21   226-264      8.20  453.28  4.8e-05       17.5%     54.38
  WD 7:  Seg 25   277-313      6.18  369.82  0.00065       25.0%     51.87
  WD 8:  Seg 29   314-350      4.98  320.51  0.00298       15.0%     44.15
  WD 9:  Seg 33   351-377      3.04  240.28  0.03540        7.5%     20.41
  WD10:  Seg 36   378-418      4.65  306.54  0.00460       10.0%     57.90
  WD11:  Seg 40   427-465      7.78  436.17  8.2e-05       17.5%     53.84
  WD12:  Seg 44   466-512      6.59  386.91  0.00038       25.0%     57.60
  WD13:  Seg 48   516-554      7.99  444.57  6.3e-05       17.5%     56.93
  WD14:  Seg 53   568-608      6.10  366.65  0.00071       12.5%     50.40

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MG----E----FKVHRV-RFFNYVPS---GIRCVAYNNQSNRLAVSRTDGTVEIYN
   WD 2   45-87     LS----A-NYFQ----E-KFFPGHES---RGTEALCWAGGQRLFSAGLNGEILEYD
   WD 3   91-129    -L----N----I----K-YTLDAFGG---PIWSMTASPSGSQLLVGCEDGSVKLFE
   WD 4  130-172    VTPEKIQ----F----A-RNFDRQKS---RILSLCWHPAGTHVAAGSLD-YISVFD
   WD 5  185-222    DR----Q----H----L--GVTKSRC---IVWGVAFLSDGTVISVDS-VGKVQLWD
   WD 6  226-264    -G----T----L----V-KSHLVANA---DVQSIAVADQEDSFVVGTAEGTVFHFQ
   WD 7  277-313    -W----V----R----T-KPFQHHTH---DVRAVAHSPTA--LISGGTDTHLVIRP
   WD 8  314-350    LM----E----R----V--EVKNYDA---ALRKITFP--HRRLISCSKRRQLLLFQ
   WD 9  351-377    -----------------------------FAHHLELWRLGSTSATGKNGDTLPLSK
   WD10  378-418    NA----D---HL----L-HLKTKGPE---NIICSCVSPCGSWIAYSTASRFFLYRL
   WD11  427-465    -L----Q----R----V-SKLPSFLR---SALHILFSEDSTKLLVASNQGSLHIVH
   WD12  466-512    LS----EGSFKH----L-HTFQPQSGTVEAMCLLAVSPDGNWLAASGTSAGVHVYD
   WD13  516-554    -L----K----L----H-CTVPAYNF---PVTALAIAPNTNNLVIAHSDQQVFEFS
   WD14  568-608    QK----Q----G----FHQLWLQRDT---PITHISFHPKRPMHILLHDAYMFCIID

   WD40 Template    TG----E----C----L-RTLSGHTS---GVTSVSFSPDGKRLVSGSEDGTIKVWD