Input parameters:

  Query = ENSMUSP00000047825 (Len=532)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000047825, Len=532):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKTSEERLLAPDSLPPDLAPAPVPQGSPAEKNTDFEPVPPPCGGDDQPQLATDPVASLVVSQELQQGDSVPLEVEFNTSS 80  
WD40-rpts            (____________________WD 1____________________)     (______________WD 2____

Query       81 ELSPGIEEQDVSEHASLPGEETNLPELESGEATEGVSEERAEVDEGDTFWTYSFSQVPRYLSGSWSEFSTRSENFLKGCK 160 
WD40-rpts      _________)(__________________WD 3_________________)          (_________________W

Query      161 WAPDGSCILTNSADNVLRIYNLPPELYSEQEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHI 240 
WD40-rpts      D 4_________________)                        (________________WD 5______________

Query      241 WDAFTGELRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATFAKKQGQSGIISCIAFSPS 320 
WD40-rpts      _)   (___________________WD 6__________________)          (_________________WD 7

Query      321 QPLYACGSYGRTIGLYAWDDGSPLALLGGHQGGITHLCFHPDGNLFFSGARKDAELLCWDLRQPGHLLWSLSREVTTNQR 400 
WD40-rpts      ________________)   (_________________WD 8_________________)    (_______________

Query      401 IYFDLDPSGQFLVSGNTSGVVSVWDISGALSDDSKLEPVVTFLPQKDCTNGVSLHPTLPLLATASGQRVFPEPTNSGDEG 480 
WD40-rpts      ___WD 9_________________)(______________________WD10_____________________)      

Query      481 ELELELPLLSLCHAHPECQLQLWWCGGGPDPSSPVDDQDEKGQRRTEAVGMS 532 
WD40-rpts                                                          

10 WD40-repeats found in QUERY=ENSMUSP00000047825 (Len=532):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     7-52       3.95  277.98  0.01112       10.0%     -16.30
  WD 2:  Seg  2    58-90       3.26  249.26  0.02691       17.5%     24.57
  WD 3:  Seg  5    91-131      5.72  351.08  0.00115       12.5%     35.38
  WD 4:  Seg  9   142-181      9.54  508.83  8.6e-06       15.0%     48.12
  WD 5:  Seg 13   206-242      8.49  465.37  3.3e-05       25.0%     47.79
  WD 6:  Seg 17   246-288      6.57  385.90  0.00039       30.0%     53.42
  WD 7:  Seg 21   299-337      8.20  453.32  4.8e-05       20.0%     54.59
  WD 8:  Seg 25   341-380      8.97  485.35  1.8e-05       40.0%     55.14
  WD 9:  Seg 29   385-425      8.19  452.90  4.9e-05       37.5%     54.06
  WD10:  Seg 33   426-474      6.84  397.32  0.00027       17.5%     44.68

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    7-52     RL---------LAPDSLPPDL-----APAP--VPQG--SPAEKNTDFEPVPPPCG-GDDQPQLAT
   WD 2   58-90     -L---------VVSQELQQGD-----SVPL--EVEF--NT------------SSE-LSPGIEEQD
   WD 3   91-131    -V---------SEHASLPGEE-----TNLPELESGE--AT------EGVSEERAE-VDEGDTFWT
   WD 4  142-181    SG---------SWSEFSTRSE-----NFLK--GCKW--AP------DGSCILTNS-ADNVLRIYN
   WD 5  206-242    EG---------D---TIYDYC-----WYSL--MSST--QP------DTSYVASSS-RENPIHIWD
   WD 6  246-288    -G---------ELRASFRAYNHLDELTAAH--SLCF--SP------DGSQLFCGF--NRTVRVFS
   WD 7  299-337    -R---------ATFAKKQGQS-----GIIS--CIAF--SP------SQPLYACGS-YGRTIGLYA
   WD 8  341-380    -G---------SPLALLGGHQ-----GGIT--HLCF--HP------DGNLFFSGARKDAELLCWD
   WD 9  385-425    -G---------HLLWSLSREV-----TTNQ--RIYFDLDP------SGQFLVSGN-TSGVVSVWD
   WD10  426-474    ISGALSDDSKLEPVVTFLPQK-----DCTN--GVSL--HP------TLPLLATAS-GQRVFPEPT

   WD40 Template    TG---------ECLRTLSGHT-----SGVT--SVSF--SP------DGKRLVSGS-EDGTIKVWD