Input parameters:

  Query = ENSMUSP00000047334 (Len=999)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000047334, Len=999):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEPGKRRTKDDTWKADDLRKHLKVQSGSPKEEKKLREKKAHKDSESAAPEYREHKSRDPDREARHKEKTAERDLYTSTEH 80  
WD40-rpts                                                                                      

Query       81 PRGERDRERHKERRKDAKDREKDKLKERHRDQEAEKAHSRGKDREREKDRRARKEEIRQSMAYHDLLSRDMRGRQMAEKV 160 
WD40-rpts                                                                                      

Query      161 EKKASKIRTEERERRDEDSERIDEDRERRYRERKLQYGDSKEHPLSYWLYKEDGEKKHRKAKDADREKRLREKSSMREKR 240 
WD40-rpts                                                                                      

Query      241 ERHAREKGSSLSDREVEDRHREKRHKEGLHYDDERRRSHADKKERSSKEEHKKRELKELEKEDNDLEATGPDEYLPNLED 320 
WD40-rpts                                                                                      

Query      321 DFVDYEDDFEVCDGDDDSNNEHEAREKAEELPLAQKREIQEIQKAISAENERVGELSLKMFQKQGWTEYTKEPWTDANDS 400 
WD40-rpts                                                                                      

Query      401 PSRTPVCGIFVDFATASHRQKSRSQALKQKTRSSKLLRLIDLDFSFTFSLLDLPPVNEYDMYIRNFGKKNTKQAYVQYNE 480 
WD40-rpts                                                                                      

Query      481 DNVERDIQTEDIETREVWTQHPGEGTAVSGGSEEKDFSDVTVVPKIDTPRLANFLRAACQVVAVLLEEDRLAAGPSWIPR 560 
WD40-rpts                                                                                      

Query      561 AQDKALNISDSSSQLNTSLPFLQSRKVSCLHASRVQRQTVVSVHDLPEKAFAPSLDSRHLLCVWDIWQPSGPQKVLICES 640 
WD40-rpts                                                                       (______________

Query      641 KVTCCCFSPLKAFLLFAGTVHGSVVVWDLREDSRIHHYVRLSNCFWAFRTPTFSTDGILTSVNHRSPLQAIEPVATSAYK 720 
WD40-rpts      _____WD 1__________________)                                                    

Query      721 KQSFVLSPFSTQEEMAGLSFHIASLDETGVLNVWVVVELPKADISGSMSDLGLIPGGRIKLVHSTVIQLGNSLSHKDSEL 800 
WD40-rpts                                                                                      

Query      801 WGSTQTLSVKFLPSDPNHFVVGTDMGLISHSTRQDWRVSPRVFKPEQHGVRPIKVNVIDFSPFEETVFLAGCSDGSIRLH 880 
WD40-rpts                                                                                      

Query      881 QLTSERPIMQWDNSTSGHAVTSLQWSPTRPAVFLVQDDASRIYVWDLLENDLGPVAQQPISPDKLVAMTIVGEPEKTSGS 960 
WD40-rpts                                                                                      

Query      961 FVALVLARTSGTVDVQNLKRRWTTPAVDEHSQLRLLLQK 999 
WD40-rpts                                             

1 WD40-repeats found in QUERY=ENSMUSP00000047334 (Len=999):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   626-668      3.20  246.64  0.02915       30.0%     37.33

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  626-668    IWQPSGPQKVLICESKVTCCCFSPLKAFLLFAGTVHGSVVVWD

   WD40 Template    TGECL--RTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD