Input parameters:

  Query = ENSMUSP00000047210 (Len=950)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000047210, Len=950):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDTCGVGYVALGEADPVGSMIVVDSPGQEELSQLDVKASETSGVEASIEMSLPPPLPGFEDSSDRRLPPDQESLTRLEQQ 80  
WD40-rpts                                                                                      

Query       81 DLSSEMSKVSNTRASKPSGRRGGRTARGAKRPQQRKPPSTPLVPGLLDQSNPLSTPMPKKRSQKSKGDLLLLKLSKGLDQ 160 
WD40-rpts                                                                                      

Query      161 PESPHPKRPPEDFETPSGERPRRRAAQVVSLPNPGWPRTCDPPTSASRVLGLQACATTPGSPSHFSQTSPRALLYLQELA 240 
WD40-rpts                                                                                      

Query      241 EELSTALPAPPLSGPKSPKVSSPTKPKKTRQASSQGEEDGSARDEDFVLQVEGEDEEESEAPSENSSDPEPVAPRSTPRG 320 
WD40-rpts                                                                                      

Query      321 PAAGKQKPHCRGMAPNGLPNYIMAPVWKCLHLTKDLREQHHSFWEFAEWIPVAWKWQLLSELEAAPYLPQEEKSPLFSVQ 400 
WD40-rpts                                                                                      

Query      401 REGIPEDGTIYRINRFSSITAHPERWDVSFFTGGPLWALDWCPVPEGSAASQYVALFSSPDMNETHPLSQLHSGPGLLQL 480 
WD40-rpts                                                                                      

Query      481 WGLGTLQQESCPGNRAHFVYGIACDSGCIWDLKFCPSGAWEHPETLRKAPLLPRLGLLALACSDGKVLLFSLPHPEALLA 560 
WD40-rpts                                                                                      

Query      561 QQPPDAMKPAIYKVQCLATLQVGSVQASDPSECGQCLSLAWMPTRPHHHLAAGYYNGMVVFWNLPTNSPLQRIRLSDGSL 640 
WD40-rpts                            (__________________WD 1_________________)                 

Query      641 KLYPFQCFLAHDQAVRTIQWCKANSHFLVSAGSDRKIKFWDLRRPYEPINCIKRFLSTELSWLLPYNGVTVAQDNCYASY 720 
WD40-rpts               (_____________WD 2_____________)                                       

Query      721 GLCGIHYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTVAAGDISGELIAAILPDMASNPINVKKPAERRFPIYKADLIP 800 
WD40-rpts                   (_________________WD 3________________)                            

Query      801 YQDSPEDQDYSSTSSETPNPPKARTYTETINHHYLLFQDTDLSSFHNLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKVR 880 
WD40-rpts                                                                                      

Query      881 FSPNLDSYGWLVSGGQSGLVRIHFVRGLTSPLAHRVQLESRANFNAMFQPSFPTEGPGFSPSSHCLLPNP 950 
WD40-rpts                                                                            

3 WD40-repeats found in QUERY=ENSMUSP00000047210 (Len=950):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 13   583-623      3.49  259.00  0.01995       17.5%     31.16
  WD 2:  Seg 17   650-681      3.26  249.38  0.02680       25.0%     41.84
  WD 3:  Seg 23   734-772      3.46  257.44  0.02093       17.5%     48.36

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  583-623    GSVQASDPSECGQCLSLAWMP-TRPHHHLAAGYYNGMVVFWN
   WD 2  650-681    --------AHDQAVRTIQWCKANS--HFLVSAGSDRKIKFWD
   WD 3  734-772    GFKAYFTAPRKGTVWSLSGSD-WL--GTVAAGDISGELIAAI

   WD40 Template    GECLRTLSGHTSGVTSVSFSP-DG--KRLVSGSEDGTIKVWD