Input parameters:

  Query = ENSMUSP00000047012 (Len=598)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000047012, Len=598):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDDHNLEEFRRHWQEELAQSQALRRRRRLEAGERRSPRRPEAGARGEPASGYLGLAQGLLEGAGRPPAPRPGRGGDRKDT 80  
WD40-rpts                                                                                      

Query       81 SSRSRSPPDRDATEPEPLVDQLIRDLNELDDVPFFDVRLPYELAINIFQYLNRRELGLCAQVSKTWKVIAEDEVLWYRLC 160 
WD40-rpts                                                                                      

Query      161 RQEGHLPHSRFSDYTCWKLILQECLAKEHTLRANWKNRKGAVSELEHVPDAVLCDVRSHDGVVIAGYTSGDVRVWDTRTW 240 
WD40-rpts                                            (________________WD 1________________)    

Query      241 DYVAPFLESESEEEDPGMQPYVSFVRINSSLAVAAYEDGILNIWDLRTGRFPIFRFEHDARIQALALSQEKPIVATASAF 320 
WD40-rpts            (_________________WD 2________________)   (_________________WD 3__________

Query      321 DVVMLYPNEEGHWHVASEFEVQKLVDYLEIVPNTGRYPVAIATAGDLVYLLKADDSARTLHYVYGQPATCLDVSASQVAF 400 
WD40-rpts      ______)          (___________________WD 4___________________)   (______________W

Query      401 GVKSLGWVYEGNKILVYSLEAERCLSKLGNALGDFTCVNIRDSPPNLMVSGNMDRRVRIHDLRSDKIALSLSAHQLGVSA 480 
WD40-rpts      D 5______________)   (_________________WD 6_________________)   (_______________

Query      481 VQMDDWKVVSGGEEGLVSVWDYRMNQKLWEVHSRHPVRYLSFNSHSLITANVPYEKVLRNSDLDNFACHRRHRGLIHAYE 560 
WD40-rpts      _WD 7_______________)   (________________WD 8________________)(________________W

Query      561 FAVDQLAFQSPLPVCRLPRDIMAGYSYDLALSFPHDSI 598 
WD40-rpts      D 9_______________)                   

9 WD40-repeats found in QUERY=ENSMUSP00000047012 (Len=598):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   199-236      6.23  371.83  0.00061       25.0%     51.32
  WD 2:  Seg  8   247-285      6.17  369.65  0.00065       25.0%     38.87
  WD 3:  Seg 11   289-327      7.99  444.64  6.3e-05       10.0%     44.62
  WD 4:  Seg 15   338-381      5.48  341.09  0.00157       12.5%     43.68
  WD 5:  Seg 19   385-418      4.93  318.47  0.00318       22.5%     39.83
  WD 6:  Seg 23   422-461      7.56  426.86  0.00011       25.0%     54.75
  WD 7:  Seg 27   465-501      7.87  439.66  7.4e-05       37.5%     52.96
  WD 8:  Seg 31   505-542      5.62  346.89  0.00132       12.5%     53.06
  WD 9:  Seg 35   543-579      3.82  272.29  0.01325       12.5%     30.55

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  199-236    -K-GAVSELEHVPDAVL-----CDVRSH-DGV-VIAGYTSGDVRVWD
   WD 2  247-285    LESESEEEDPGMQPYVS-----FVRI---NSSLAVAAYEDGILNIWD
   WD 3  289-327    -G-RFPIFRFEHDARIQ-----ALALSQ-EKPIVATASAFDVVMLYP
   WD 4  338-381    -E-FEVQKLVDYLEIVPNTGRYPVAIAT-AGDLVYLLKADDSARTLH
   WD 5  385-418    -G-QPATCLDVSASQV----------AF-GVKSLGWVYEGNKILVYS
   WD 6  422-461    -E-RCLSKLGNALGDFT-----CVNIRDSPPNLMVSGNMDRRVRIHD
   WD 7  465-501    -D-KIALSLSAHQLGVS-----AVQM---DDWKVVSGGEEGLVSVWD
   WD 8  505-542    -N-QKLWEVHSR-HPVR-----YLSFNS-HSLITANVPYEKVLRNSD
   WD 9  543-579    -L-DNFACHRRHRGLIH-----AYEFAV-DQ--LAFQSPLPVCRLPR

   WD40 Template    TG-ECLRTLSGHTSGVT-----SVSFSP-DGKRLVSGSEDGTIKVWD