Input parameters:

  Query = ENSMUSP00000046156 (Len=1030)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000046156, Len=1030):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MENREPKLKQAPYFRCEKGPNWVPVCQKCEACVLAWKIFATKEWFRRVNDISQRRFLVSILGQLNSLYLLQYFQNILETT 80  
WD40-rpts                                                                                      

Query       81 QGKDFIYNRSRIKLSRKGGKEEEVVKSSLNQMLDKTVERKMKEILYWFGNSTHRTKANYTLLLLQMCDSNLLLTAANVIR 160 
WD40-rpts                                                                                      

Query      161 VLFMKEWNSISGLHDDTPDVMFFPEKKYSGTQDTSYVSWAARPKPVSFPMSKHLGNKLGTENVDRETTEGKGESSLQCIH 240 
WD40-rpts                                                                                      

Query      241 EMNRQIFGKGGMSRLGDDPCNLLLSLDHVQLLSSGYSKYRDFIRDLPLHLSKYILRMLDKHSLNRCIFVSQHWATLAQQV 320 
WD40-rpts                                                                                      

Query      321 KVDQSMHSFIQNQISLLQVTKEEKQAYTGSYTRGIDPNYANKVSIPVPKIVDDGKRSRSKNQKWKLRTKTDYNLWNAYQN 400 
WD40-rpts                                                                                      

Query      401 QETQLVQMEERNVFCGTYNIRVLSDTFDQNRIIHYNGGDLMAISSNRKIHLLDIMQTKELPIEFRGHAGSVRALFLSEED 480 
WD40-rpts               (___________________WD 1___________________)    (_________________WD 2_

Query      481 NILLSGSYDLSIRYWDVKTGACVRIFYGHQGTITCLDVYKNRLVSGAKDGQVKEWDIETGKCLKTFKHKDPILAAKISET 560 
WD40-rpts      _______________)   (________________WD 3_______________)   (_______________WD 4_

Query      561 YIVSSCERGIVKVWHVVTAQLQKTLTGHEGAVKCLFFNEWHLVSGGADGLVMAWSMVGKYERCLMAFKHPKEVLQVSLLY 640 
WD40-rpts      ______________)   (________________WD 5_______________)  (_________________WD 6_

Query      641 LRVISACGDGKIRIYNFLNGNCLKVIKVDARGDPVLSFFYQGNRMVAHTDSNILVFQFENVKWQYSSDKNKVKKSKDKEE 720 
WD40-rpts      _______________)   (________________WD 7________________)                       

Query      721 EREETSLGDEHSRSTIQGHSLKDSVSSKQEFSKSRVHLKQTKNLSSDDMETPVGEVSHPLQKLWKVPMTPDRFLLTISAL 800 
WD40-rpts          (____________________WD 8____________________)________________________WD 9__

Query      801 QQAHNSEEFAYPHRPRPQVIDAWGPSIPYPRKVLSLKGKSVQHAVDQLRSSNLPTGVRQTNIPLEIQKLQPNLKKSLHSP 880 
WD40-rpts      _______________________)                                                        

Query      881 RVQATVPQPSLIRPKVSDSLRGDEHLTSSIDGTMRRAGPLTSMQVIKPNRMLAPRGGTATLSPKKERPRFYTTLDPLRMN 960 
WD40-rpts                                                                                      

Query      961 TGFMLMTVKEEKEFAEAKMKEYEASVSTKEVDPGKASKAAWIRKIKGLPIDNFMKEGKTAAPELGQNVFI 1030
WD40-rpts                                                                            

9 WD40-repeats found in QUERY=ENSMUSP00000046156 (Len=1030):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   410-453      4.50  300.71  0.00550       20.0%     49.38
  WD 2:  Seg  8   458-496      9.17  493.53  1.4e-05       32.5%     54.54
  WD 3:  Seg 12   500-536      8.36  460.06  3.9e-05       37.5%     49.12
  WD 4:  Seg 16   540-575      6.15  368.83  0.00067       32.5%     52.42
  WD 5:  Seg 20   579-615      7.63  429.73  0.00010       32.5%     54.21
  WD 6:  Seg 24   618-656      8.16  451.58  5.1e-05       22.5%     52.21
  WD 7:  Seg 28   660-697      7.11  408.53  0.00019       30.0%     49.03
  WD 8:  Seg 34   725-770      5.56  344.52  0.00142       15.0%     38.37
  WD 9:  Seg 37   769-824      5.01  321.47  0.00289       17.5%     16.87

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  410-453    ER----NVFCGTYNIRVLSDTF--DQNRII--HYNGGDLMAI----------------SSNRKIHLLD
   WD 2  458-496    -K----EL------PIEFRGHA--GSVRALFLSEEDNILLSG----------------SYDLSIRYWD
   WD 3  500-536    -G----AC------VRIFYGHQ--GTITCLDVYKNR--LVSG----------------AKDGQVKEWD
   WD 4  540-575    -G----KC------LKTF-KHK--DPILAAKISET--YIVSS----------------CERGIVKVWH
   WD 5  579-615    -A----QL------QKTLTGHE--GAVKCLFF--NEWHLVSG----------------GADGLVMAWS
   WD 6  618-656    -G----KY------ERCLMAFK--HPKEVLQVSLLYLRVISA----------------CGDGKIRIYN
   WD 7  660-697    -G----NC------LKVIKVDA--RGDPVLSFFYQGNRMVAH----------------T-DSNILVFQ
   WD 8  725-770    TSLGDEHS------RSTIQGHSLKDSVSSKQEFSKSRVHLKQ----------------TKNLSSDDME
   WD 9  769-824    ME----TP------VGEVSHPL--QKLWKVPMTPDRFLLTISALQQAHNSEEFAYPHRPRPQVIDAWG

   WD40 Template    TG----EC------LRTLSGHT--SGVTSVSFSPDGKRLVSG----------------SEDGTIKVWD