Input parameters:

  Query = ENSMUSP00000045468 (Len=1183)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000045468, Len=1183):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRAVLTWRDKAEQCIYDLAFKPDGTQLILAAGNRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSIIIW 80  
WD40-rpts      (_________________WD 1_________________)  (_________________WD 2________________

Query       81 TSKLEGILKYTHNDSIQCVSYNPVTHQLASCSSSDFGLWSPEQKSVSKHKSSSKITCCSWTNDGQYLALGMANGIISIRN 160 
WD40-rpts      )(_________________WD 3________________)(_________________WD 4_________________)

Query      161 KNGEEKVKIERPGGSLSPIWSICWNPSREEHNDILAVADWGQKLSFYQLSGKQIGKDRPLNFDPCCISYFTKGEYILVGG 240 
WD40-rpts      (_____________________WD 5_____________________)  (_________________WD 6________

Query      241 SDKQVSLFTKDGVRLGTVGEQNSWVWTCRVKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDSMTDVIVQHLIT 320 
WD40-rpts      ________)  (_________________WD 7________________)                              

Query      321 EQKVRIKCRELVKKIAIYKNRLAIQLPEKILIYELYSEDSTDMHYRVKEKIVKKFECNLLVVCADHIILCQEKRLQCLSF 400 
WD40-rpts                                                                                      

Query      401 SGVKEREWQMESLIRYIKVIGGPAGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRNKLAVVDENDTCL 480 
WD40-rpts      (__________________WD 8__________________) (_________________WD 9_______________

Query      481 VYDIHTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFSMSAVEVPQSA 560 
WD40-rpts      __)(________________WD10________________)                                       

Query      561 PMYQYLDRKMFKEAYQIACLGVTDADWRELAMEALEGLEFETARKAFTRVQDLRYLELISSIEERKKRGETNNDLFLADV 640 
WD40-rpts                                                                                      

Query      641 FSYQGKFHEAAKLYKRSGHENLALDMYTDLCMFEYAKDFLGSGDPKETKMLITKQADWARNINEPKAAVEMYISAGEHAK 720 
WD40-rpts                                                                                      

Query      721 AIEISGSHGWVDMLIDIARKLDKAEREPLLMCACYFKKLDSPGYAAETYLKIGDLKSLVQLYVDTKRWDEAFALGEKHPE 800 
WD40-rpts                                                                                      

Query      801 FKDDVYVPYAQWLAENDRFEEAQKAFHKAGRQGEAVRVLEQLTHNAVVESRFNDAAYYYWMLSMQCLDMAQADPAQKDAM 880 
WD40-rpts                                                                                      

Query      881 LDKFHHFQHLAELYHGYQTIHRYTEEPFSFDLPETLFNISKFLLHSLTKATPLGISKVNTLFTLAKQSKALGAYKLARHA 960 
WD40-rpts                                                                                      

Query      961 YDKLRGLQIPARIQKSIELGTLTIRSKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFIFSASSYEVLHLVEFYL 1040
WD40-rpts                                                                                      

Query     1041 EEGITDEEAVALIDLEAPRHKREGKWRETSSNNSQTLKLDETMDSIGEDDPFTAKLSFEQGSSEFVPVVVNRSVLRSMSR 1120
WD40-rpts                                                                                      

Query     1121 RDVLIKRWPPPLQWQYFRSLLPDASITMCPSCFQMFHSEDYELLVLQHACCPYCRRRIDDTGP 1183
WD40-rpts                                                                     

10 WD40-repeats found in QUERY=ENSMUSP00000045468 (Len=1183):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-40       5.19  329.24  0.00227       15.0%     47.21
  WD 2:  Seg  5    43-81       9.22  495.34  1.3e-05       42.5%     55.50
  WD 3:  Seg  9    82-120      4.82  313.86  0.00366       20.0%     49.25
  WD 4:  Seg 13   121-160      6.79  395.09  0.00029       22.5%     54.28
  WD 5:  Seg 17   161-208      3.27  249.75  0.02650       12.5%     47.61
  WD 6:  Seg 21   211-249      4.90  317.09  0.00331       12.5%     52.40
  WD 7:  Seg 25   252-290      6.86  398.06  0.00027       32.5%     55.97
  WD 8:  Seg 40   401-442      3.61  263.77  0.01723       15.0%     48.49
  WD 9:  Seg 44   444-483      6.01  362.89  0.00080       20.0%     56.54
  WD10:  Seg 48   484-521      2.79  230.08  0.04826       12.5%     42.74

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-40     MR----AVLTW--RDKAEQCIYDLAFKPDGTQ----LILAAGNRLLVYDT
   WD 2   43-81     -G----TLLQP--LKGHKDTVYCVAYAKDGKR----FASGSADKSIIIWT
   WD 3   82-120    SK----LEGIL--KYTHNDSIQCVSYNPVTHQ----LASCS-SSDFGLWS
   WD 4  121-160    PE----QKSVS--KHKSSSKITCCSWTNDGQY----LALGMANGIISIRN
   WD 5  161-208    KNGEEKVKIER--PGGSLSPIWSICWNPSREEHNDILAVADWGQKLSFYQ
   WD 6  211-249    -G----KQIGK--DRPLNFDPCCISYFTKGEY----ILVGGSDKQVSLFT
   WD 7  252-290    -G----VRLGT--VGEQNSWVWTCRVKPDSNY----VVVGCQDGTISFYQ
   WD 8  401-442    SG----VKEREWQMESLIRYIKVIGGPAGREG----LLVGLKNGQILKIF
   WD 9  444-483    DN----LFAIV--LLKQATAVRCLDMSASRNK----LAVVDENDTCLVYD
   WD10  484-521    IH----T--KE--LLFQEPNANSVAWNTQCED----MLCFSGGGYLNIKA

   WD40 Template    TG----ECLRT--LSGHTSGVTSVSFSPDGKR----LVSGSEDGTIKVWD