WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: ENSMUSP00000044801 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000044801 (Len=4859) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000044801, Len=4859): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MATMVPPVKLKWLEHLNSSWITEDSESIATREGVTVLYSKLISNKEVVPLPQQVLCLKGPQLPDFERESLSSDEQDHYLD 80
WD40-rpts
Query 81 ALLSSQLALAKMVCSDSPFAGALRKRLLVLQRVFYALSNKYHDKGKVKQQQHSPESSSGSADVHSVSERPRSSTDALIEM 160
WD40-rpts
Query 161 GVRTGLSLLFALLRQSWMMPVSGPGLSLCNDVIHTAIEVVSSLPPLSLANESKIPPMGLDCLSQVTTFLKGVTIPNSGAD 240
WD40-rpts
Query 241 TLGRRLASELLLGLAAQRGSLRYLLEWIEMALGASAVVYTMEKNKLLSSQEGMISFDCFMAILMQMRRSLGSSADRSQWR 320
WD40-rpts
Query 321 EPTRTSEGLCSLYEAALCLFEEVCRMASDYSRTCASPDSIQTGDAPIVSETCEVYVWGSNSSHQLVEGTQEKILQPKLAP 400
WD40-rpts
Query 401 SFSDAQTIEAGQYCTFVISTDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEPHRSIKKVSSSKGSDGHTLAFTTEGEVF 480
WD40-rpts
Query 481 SWGDGDYGKLGHGNSSTQKYPKLIQGPLQGKVVVCVSAGYRHSAAVTEDGELYTWGEGDFGRLGHGDSNSRNIPTLVKDI 560
WD40-rpts
Query 561 SNVGEVSCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVIEALQGMFIRKVCAGSQSSLALTSTGQVYAWGC 640
WD40-rpts
Query 641 GACLGCGSSEATALRPKLIEELAATRIVDISIGDSHCLSLSHDNEVYAWGNNSMGQCGQGNSTGPITKPKKVSGLDGIAI 720
WD40-rpts
Query 721 QQISAGTSHSLAWTALPRDRQVVAWHRPYCVDLEESTFSHLRSFLERYCDKINSEIPPLPFPSSREHHNFLKLCLKLLSN 800
WD40-rpts
Query 801 HLALALAGGVATSILGRQAGPLRNLLFRLMDSTVPDEIQEVVIETLSVGATMLLPPLRERMELLHSLLPQGPDRWESLSK 880
WD40-rpts
Query 881 GQRMQLDIILTSLQDHTHVASLLGYSSPSDAADLSTVCMGYGNLSDQPYGSQICHPDTHLAEILMKTLLRNLGFYTDQAF 960
WD40-rpts
Query 961 GELEKNSDKYLLGTSSSENSQPAHLHELLCSLQKQLLAFCHINNVTENSSSVALLHKHLQLLLPHATDIYSRSANLLKES 1040
WD40-rpts
Query 1041 PWNGSVGEKLRDVIYVSAAGSMLCQIVNSLLLLPVSVARPLLSYLLDLLPPLDCLNRLLPAAALLEDQELQWPLHGGPEV 1120
WD40-rpts
Query 1121 IDPAGVPLPQPAQSWVWLVDLERTIALLIGRCLGGMLQGSPVSPEEQDTAYWMKTPLFSDGVEMDTPQLDKCMSCLLEVA 1200
WD40-rpts
Query 1201 LSGNEEQKPFDYKLRPEVAVYVDLALGCSKEPARSLWISMQDYAVSKDWDSATLSNESLLDTVSRFVLAALLKHTNLLSQ 1280
WD40-rpts
Query 1281 ACGESRYQPGKSLSEVYRCVYKVRSRLLACKNLELIQTRSSSRDRWITDNQDSADVDPQEHSFTRTIDEEAEMEELAERD 1360
WD40-rpts
Query 1361 REDGHPEPEDEEEEREHEVMTAGKIFQCFLSAREVARSRDRDRMNSGAGSGVRADDPPPQSQQERRVSTDLPEGQDVYTA 1440
WD40-rpts
Query 1441 ACNSVIHRCALLILGVSPVIDELQKRREEGQLQQPSVSASEGTGLMTRSESLTAESRLVHASPSYRLIKSRSESDLSQPE 1520
WD40-rpts
Query 1521 SDEEGYALSGRRNVDFDLASSHRKRGPMHSQLESLSDSWTRLKHTRDWFYNSSYSFESDFDLTKSLGVHTLIENVVSFVS 1600
WD40-rpts
Query 1601 GDVGNAPGFKEPEESMSTSPQASIIAMEQQQLRAELRLEALHQILTLLSGMEEKGNVLLTGSRSSSGFQSSTLLTSVRLQ 1680
WD40-rpts
Query 1681 FLAGCFGLGTVGHTGTKGESGRLHHYQDGIRAAKRNIQVEIQVAVHKIYQQLSATLERALQANKHHIEAQQRLLLVTVFA 1760
WD40-rpts
Query 1761 LSVHYQPVDVSLAISTGLLNVLSQLCGTDTMLGQPLQLLPKTGVSQLSTALKVASTRLLQILAITTGTYADKLSPKVVQS 1840
WD40-rpts
Query 1841 LLDLLCSQLKNLLSQTGVLFMASFGEGEEGEEEEKKVDSSGEAEKRDFRAALRKQHAAELHLGDFLVFLRRVVSSKAIQS 1920
WD40-rpts (________________________________________________________________
Query 1921 KMASPKWTEVLLNIASQKCSSGIPLVGNLRTRLLALHVLEAVLPACESGVEDDQMAQVVERLFSLLSDCMWETPIAQAKH 2000
WD40-rpts ________________WD 1____________________________________________________________
Query 2001 AIQIKEKEQEIKLQKQGELEEEDENLPIQEVSFDPEKAQCCIVENGQILTHGSGGKGYGLASTGVTSGCYQWKFYIVKEN 2080
WD40-rpts ___________________)
Query 2081 RGNEGTCVGVSRWPVHDFNHRTTSDMWLYRAYSGNLYHNGEQTLTLSSFTQGDFITCVLDMEARTISFGKNGEEPKLAFE 2160
WD40-rpts
Query 2161 DVDAAELYPCVMFYSSNPGEKVKICDMQMRGTPRDLLPGDPICSPVAAVLAEATIQLIRILHRTDRWTYCINKKMMERLH 2240
WD40-rpts
Query 2241 KIKICIKESGQKLKKSRSVQSREENEMREEKENKEEEKGKHNRHGLADLSEPQLRTLCIEVWPVLAVIGGVDAGLRVGGR 2320
WD40-rpts
Query 2321 CVHKQTGRHATLLGVVKEGSTSAKVQWDEAEITISFPTFWSPSDTPLYNLEPCEPLLFDVARFRGLTASVLLDLTYLTGI 2400
WD40-rpts
Query 2401 HEDVGKQSIKRHEKKHRHESEEKGDIEQKPESESILDVRTGLMSDDVKSQGTTSSKSENEIASFSLEPTLPGVESQHQIT 2480
WD40-rpts
Query 2481 EGKRKNHEHISKTHDIAQSEIRAVQLSYLYLGAMKSLSALLGCSKYAELLLIPKVLAENGHNSDCASSPVVHEDVEMRAA 2560
WD40-rpts
Query 2561 LQFLMRHMVKRAVMRSPIKRALGLADLERAQAMIYKLVVHGLLEDQFGGKIKQEIDQQAEESDQAQQAQTPVTTSPSASS 2640
WD40-rpts
Query 2641 TTSFMSSSLEDTTTATTPVTDTETVPASESPGVMPLSLLRQMFSSYPTTTVLPTRRAQTPPISSLPASPSDEVGRRQSLT 2720
WD40-rpts
Query 2721 SPDSQSTRPANRTALSDPSSRLSTSPPPPAIAVPLLEMGFSLRQIAKAMEATGARGEADAQSITVLAMWMIEHPGHEDEE 2800
WD40-rpts
Query 2801 EPQPSSTADSRHGATVLGSGGKSNDPCYLQSPGDIPSADAAEMEEGFSESPDNLDHTENAASGSGPPTRGRSTVTRRHKF 2880
WD40-rpts
Query 2881 DLAARTLLARAAGLYRSVQAHRNQSRREGISLQQDPGALYDFNLDEELEIDLDDEAMEAMFGQDLTSDNDILGMWIPEVL 2960
WD40-rpts
Query 2961 DWPTWHVCESEDREEVVVCELCECNVVSFNQHMKRNHPGCGRSANRQGYRSNGSYVDGWFGGECGSGNPYYLLCGSCREK 3040
WD40-rpts
Query 3041 YLALKTKTKTTNSERYKGQAPDLIGKQDSVYEEDWDMLDVDEDEKLTGEEEFELLAGPLGLNDRRIVPEPVQFPDSDPLG 3120
WD40-rpts
Query 3121 ASVAMVTATNSMEETLMQIGCHGSVEKSSSGRVTLGEQAAALANPHDRVVALRRVTAAAQVLLARTMVMRALSLLSVSGS 3200
WD40-rpts
Query 3201 SCSLAAGLESLGLTDIRTLVRLMCLAAAGRAGLSTSPSAIASTSERSRGGHSKASKPISCLAYLSTAVGCLASNTPSAAK 3280
WD40-rpts
Query 3281 LLVQLCTQNLISAATGVNLTTVDDPIQRKFLPSFLRGIAEENKLVTSPNFVVTQALVALLADKGAKLRPNYDKTEIEKKG 3360
WD40-rpts
Query 3361 PLELANALAACCLSSRLSSQHRQWAAQQLVRTLAAHDRDNQTAPQTLADMGGDLRKCSFIKLEAHQNRVMTCVWCNKKGL 3440
WD40-rpts (____________________WD 2______
Query 3441 LATSGNDGTIRVWNVTKKQYSLQQTCVFNRLEGDAEESLGSPSDPSFSPVSWSISGKYLAGALEKMVNIWQVNGGKGLVD 3520
WD40-rpts _____________)
Query 3521 IQPHWVSALAWPEEGPATTWSGESPELLLVGRMDGSLGLIEVVDVSTMHRRELEHCYRKDVSVTCIAWFSEDRPFAVGYF 3600
WD40-rpts (_________________________WD 3_________________
Query 3601 DGKLLMGTKEPLEKGGIVLIDAHKETLVSMKWDPTGHILMTCAKEENVKLWGPVSGCWRCLHSLCHPSTVNGIAWCSLPG 3680
WD40-rpts _______)(___________________WD 4___________________)
Query 3681 KGSKMQLLMATGCQNGLVCVWRIPQDTTQTSMTSSEGWWDQESNCQDGYRKSAGAKCVYQLRGHITPVRTVAFSSDGLAL 3760
WD40-rpts (_____________WD 5
Query 3761 VSGGLGGLMNIWSLRDGSVLQTVVIGSGAIQTTVWIPEVGVAACSNRSKDVLVVNCTAEWASANHILATCRTALKQQGVL 3840
WD40-rpts ____________) (___________________________________
Query 3841 GLNMAPCMRAFLERLPMMLQEQYAYEKPHVVCGDQLVHSPYMQCLASLAVGLHLDQLLCNPPVPPHHQNCLPDPTSWNPN 3920
WD40-rpts ________WD 6__________________________________________)
Query 3921 EWAWLECFSTTIKAAEALTNGAQFPESFTVPDLEPVPEDELVLLMDNSKWINGMDEQIMSWATSRPEDWHLGGKCDVYLW 4000
WD40-rpts
Query 4001 GAGRHGQLAEAGRNVMVPATAPSFSQAQQVICGQNCTFVIQANGTVLACGEGSYGRLGQGNSDDLHVLTVISALQGFVVT 4080
WD40-rpts
Query 4081 QLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGD 4160
WD40-rpts
Query 4161 YGRLGLGNTSNKKLPERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQKVDVLCGIGIK 4240
WD40-rpts
Query 4241 KVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLAGVVIEDVAVGAEHTLALASTGDVYAWGSNSEGQ 4320
WD40-rpts
Query 4321 LGLGHTNHVREPTLVTVLQGKNIRQISAGRCHSAAWTAPPVPPRAPGVSVPLQLGLPDAVPPQYGALREVSIHTVRARLR 4400
WD40-rpts
Query 4401 LLYHFSDLMYSSWRLLNLSPNNQNSTSHYNAGTWGIVQGQLRPLLAPRVYTLPMVRSIGKTMVQGKNYGPQITVKRISTR 4480
WD40-rpts
Query 4481 GRKCKPIFVQIARQVVKLNASDLRLPSRAWKVKLVGEGADDAGGVFDDTITEMCQELETGIVDLLIPSPNATAEVGYNRD 4560
WD40-rpts
Query 4561 RFLFNPSACLDEHLMQFKFLGILMGVAIRTKKPLDLHLAPLVWKQLCCVPLTLEDLEEVDLLYVQTLNSILHIEDSGITE 4640
WD40-rpts
Query 4641 ESFHEMIPLDSFVGQSADGKMVPIIPGGNSIPLTFSNRKEYVERAIEYRLHEMDRQVAAVREGMSWIVPVPLLSLLTAKQ 4720
WD40-rpts
Query 4721 LEQMVCGMPEICVDVLKKVVRYREVDEQHQLVQWLWRTLEEFSNEERVLFMRFVSGRSRLPANTADISQRFQIMKVDRPY 4800
WD40-rpts
Query 4801 DSLPTSQTCFFQLRLPPYSSQLVMAERLRYAINNCRSIDMDNYMLSRNVDNAEGSDTDY 4859
WD40-rpts
 6 WD40-repeats found in QUERY=ENSMUSP00000044801 (Len=4859): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 40 1856-2020 3.34 252.51 0.02435 35.0% 4.62 WD 2: Seg 60 3410-3454 6.23 371.94 0.00060 32.5% 30.21 WD 3: Seg 68 3554-3608 3.96 278.07 0.01109 17.5% 36.95 WD 4: Seg 72 3609-3652 5.15 327.60 0.00239 17.5% 39.64 WD 5: Seg 78 3743-3773 6.81 396.05 0.00029 35.0% 31.56 WD 6: Seg 84 3805-3895 2.96 236.73 0.03944 15.0% 0.44Multiple sequence alignment of 6 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 1856-2020 TGV--L----FMA-----SFGEGE--------------------EGEEEEKKVDSSGEAEKRDFRAALRKQHAAELHLGDFLVFLRRVVSSKAIQSKMA-------------------SPKWTEVLLNIASQKCSSGIPLVGNLRTRLLALHVLEAVLPACESGVEDDQMAQVVERLFSLLSDCMW------------ETPIAQAKHAIQIKEKEQEIKLQKQGELE WD 2 3410-3454 MGG--D----LRKCSFIKLEAHQN--------------------RV--------MTC---------------------------------V-------W-------------------CN---------------KKGLLA---------------------TSGND----------------GTI------------RV-------------------------WN WD 3 3554-3608 DGSLGL----IEV-----VDVSTM-------HRRELEHCYRKDVSV--------TCI---------------------------------A-------W-------------------FS---------------EDRPFA---------------------VGYFD----------------GKL------------LM-------------------------GT WD 4 3609-3652 KEP--LEKGGIVL-----IDAHKE--------------------TL--------VSM---------------------------------K-------W-------------------DP---------------TGHILM---------------------TCAKE----------------ENV------------KL-------------------------WG WD 5 3743-3773 --------------------GHIT--------------------PV--------RTV---------------------------------A-------F-------------------SS---------------DGLALV---------------------SGGLG----------------GLM------------NI-------------------------WS WD 6 3805-3895 SNR--S----KDV-----LVVNCTAEWASANHILATCRTALKQQGV--------LGL---------------------------------N-------MAPCMRAFLERLPMMLQEQYAY---------------EKPHVV---------------------CGDQL----------------VHSPYMQCLASLAVGLH-------------------------LD WD40 Template TGE--C----LRT-----LSGHTS--------------------GV--------TSV---------------------------------S-------F-------------------SP---------------DGKRLV---------------------SGSED----------------GTI------------KV-------------------------WD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |