Input parameters:

  Query = ENSMUSP00000044561 (Len=254)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000044561, Len=254):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDKDGEALKAAQAELKEARRQCHHLQVEIESLHAVERGLENSLQASEQHYQMQLQDLESVIGRLERELQEVRRGIERQLR 80  
WD40-rpts                                                                                      

Query       81 EHEMLLNTKMRLEQEIATYRRLLEQEEIRYYGCIQGEKKEEKPTKSKVGFLLPSAIINEISFSTKVSQKYENENMETVTK 160 
WD40-rpts                                                                                      

Query      161 QAVVNRDVKESAEAHGTIQTEKVDEVIKEWEGSFFKDNPRLRKKSVSLRFDLHLAATDEGCLESRQDNLPDIEVRLIMRR 240 
WD40-rpts          (________________________WD 1________________________)                      

Query      241 SCSIPSIKPPPGTN 254 
WD40-rpts                    

1 WD40-repeats found in QUERY=ENSMUSP00000044561 (Len=254):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   165-218      2.85  232.54  0.04479       25.0%     26.80

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  165-218    NRDVKESAEAHGTIQTEKVDEVIKEWEGSFFKDNPRLRKKSVSLRFDLHLAATD

   WD40 Template    TGECLRTLSGHTSGVTSVS----------FSPDGKRL----VSGSEDGTIKVWD