Input parameters:

  Query = ENSMUSP00000044535 (Len=1152)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000044535, Len=1152):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRKFNIRKVLDGLTAGSSSASQQQQQQQHPPGNREPEIQETLQSEHFQLCKTVRHGFPYQPSALAFDPVQKILAVGTQTG 80  
WD40-rpts                                                     (_________________WD 1___________

Query       81 ALRLFGRPGVECYCQHDSGAAVIQLQFLINEGALVSALADDTLHLWNLRQKRPAVLHSLKFCRERVTFCHLPFQSKWLYV 160 
WD40-rpts      _____)  (_________________WD 2________________)     (_________________WD 3______

Query      161 GTERGNIHIVNVESFTLSGYVIMWNKAIELSSKAHPGPVVHISDNPMDEGKLLIGFESGTVVLWDLKSKKADYRYTYDEA 240 
WD40-rpts      __________)             (__________________WD 4_________________)  (____________

Query      241 IHSVAWHHEGKQFICSHSDGTLTIWNVRSPAKPVQTITPHGKQLKDGKKPEPCKPILKVELKTTRSGEPFIILSGGLSYD 320 
WD40-rpts      _____WD 5________________)                                                      

Query      321 TVGRRPCLTVMHGKSTAVLEMDYSIVDFLTLCETPYPNDFQEPYAVVVLLEKDLVLIDLAQNGYPIFENPYPLSIHESPV 400 
WD40-rpts                          (_________________WD 6_________________)                    

Query      401 TCCEYFADCPVDLIPALYSVGARQKRQGYSKKEWPINGGNWGLGAQSYPEIIITGHADGSVKFWDASAITLQVLYKLKTS 480 
WD40-rpts                         (____________________WD 7____________________)               

Query      481 KVFEKSRNKDDRQNTDIVDEDPYAIQIISWCPESRMLCIAGVSAHVIIYRFSKQEVLTEVIPMLEVRLLYEINDVDTPEG 560 
WD40-rpts            (___________________WD 8___________________)                              

Query      561 EQPPPLSTPVGSSNPQPIPPQSHPSTSSSSSDGLRDNVPCLKVKNSPLKQSPGYQTELVIQLVWVGGEPPQQITSLALNS 640 
WD40-rpts                                                                      (______________W

Query      641 SYGLVVFGNCNGIAMVDYLQKAVLLNLSTIELYGSNDPYRREPRSPRKSRQPSGAGLCDITEGTVVPEDRCKSPTSGSSS 720 
WD40-rpts      D 9______________)                                                              

Query      721 PHNSDDEQKVNNFIEKVKTQSRKFSKMVANDLAKMSRKLSLPTDLKPDLDVKDNSFSRSRSSSVTSIDKESRETISALHF 800 
WD40-rpts                                                                                      

Query      801 CETLTRKADSSPSPCLWVGTTVGTAFVITLNLPPGPEQRLLQPVIVSPSGTILRLKGAILRMAFLDATGCLMSPAYEPWK 880 
WD40-rpts                                                                                      

Query      881 EHNVAEEKDEKEKLKKRRPVSVSPSSSQEISENQYAVICSEKQAKVMSLPTQSCAYKQNITETSFVLRGDIVALSNSVCL 960 
WD40-rpts                                                                                      

Query      961 ACFCANGHIMTFSLPSLRPLLDVYYLPLTNMRIARTFCFANNGQALYLVSPTEIQRLTYSQETCENLQEMLGELFTPVET 1040
WD40-rpts                                                                                      

Query     1041 PEAPNRGFFKGLFGGGAQSLDREELFGESSSGKASRSLAQHIPGPGGIEGVKGAASGVVGELARARLALDERGQKLSDLE 1120
WD40-rpts                                                                                      

Query     1121 ERTAAMMSSADSFSKHAHEMMLKYKDKKWYQF 1152
WD40-rpts                                      

9 WD40-repeats found in QUERY=ENSMUSP00000044535 (Len=1152):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    48-86       6.31  375.24  0.00055       20.0%     43.80
  WD 2:  Seg  5    89-127      6.36  377.49  0.00051       22.5%     56.66
  WD 3:  Seg  9   133-171      5.84  355.95  0.00099       25.0%     54.70
  WD 4:  Seg 14   185-225      7.19  411.51  0.00018       30.0%     47.21
  WD 5:  Seg 17   228-266      6.57  386.19  0.00039       20.0%     54.88
  WD 6:  Seg 26   341-380      4.46  298.72  0.00585        7.5%     13.62
  WD 7:  Seg 32   420-465      5.59  345.51  0.00137       20.0%     38.81
  WD 8:  Seg 38   487-530      4.38  295.73  0.00642       10.0%     39.96
  WD 9:  Seg 43   625-658      3.08  241.82  0.03378       17.5%     44.80

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   48-86     -QL------CKTVRHG----FPYQPSALAFDP-VQKILAVGTQTGALRLFG
   WD 2   89-127    -GV------ECYCQHD----SGAAVIQLQFLI-NEGALVSALADDTLHLWN
   WD 3  133-171    -PA------VLHSLKF----CRERVTFCHLPF-QSKWLYVGTERGNIHIVN
   WD 4  185-225    NKA------IELSSKA----HPGPVVHISDNPMDEGKLLIGFESGTVVLWD
   WD 5  228-266    -SK------KADYRYT----YDEAIHSVAWHH-EGKQFICSHSDGTLTIWN
   WD 6  341-380    MDY------SIVDFLT----LCETPYPNDFQE-PYAVVVLLEKDLVLIDLA
   WD 7  420-465    VGARQKRQGYSKKEWP----INGGNWGLGAQS-YPEIIITGHADGSVKFWD
   WD 8  487-530    RNK------DDRQNTDIVDEDPYAIQIISWCP-ESRMLCIAGVSAHVIIYR
   WD 9  625-658    VG------------GE----PPQQITSLALNS-SYGLVVFGNCNGIAMVDY

   WD40 Template    TGE------CLRTLSG----HTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD