Input parameters:

  Query = ENSMUSP00000043055 (Len=1165)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000043055, Len=1165):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMFDTLGKRCCPWRLKPSALLFLFVLCVTCVPLSVCGCGSCRLVLSNPSGTFTSPCYPNDYPNTQSCSWTLRAPAGYIIQ 80  
WD40-rpts                                                                                      

Query       81 ITFNDFDIEEAPNCIYDSLSLDNGESQTKFCGATAKGLSFNSSVNEMHVSFSSDFSIQKKGFNASYIRVAVSLRNQKVIL 160 
WD40-rpts                            (_________________WD 1________________)                   

Query      161 PQTLDAYQVSVAKSISIPELKAFTLCFEASKVGNEGGDWTAFSYSDESLTQLLSLEKASNGYFLSISGSRCLLNNALPVK 240 
WD40-rpts                                                                                      

Query      241 DKEDIFTENLEQLCLVWNNSWGSIGINFKKNYETVPCDSTISAVVPGDGTLLLGSDRDEVASLRGSIYNFRLWNFTMDLK 320 
WD40-rpts                                                             (__________________WD 2__

Query      321 ALSNLSCSVSGNVIDWHNDFWSISTQALKAEGNLSCGSYLIQLPAAELTNCSELGTLCQDGIMYRISVVIHNDFNHPEVK 400 
WD40-rpts      ________________)                                                               

Query      401 VQTKVAEWLNSTFQNWNYTVYVVNISFHQKVGEDRMKVKRDIMDDDKRLVLWALLVYNATNNVSLNEEKIKQKLMTNNAS 480 
WD40-rpts                                                                                      

Query      481 LEDGLRLCEVDVNQLGMCSALEDPDGFSWPATLPSVYKQPCPNKPGFFMTRACLSNGTSTFWGPVDTSNCSRQSNEVANE 560 
WD40-rpts                                                                                      

Query      561 ILNQTGDGQNLTSANINSIVEKVKRIVNKEENIDITLGSTLMNIFSNILSSSDSDLLESSTEALKTIDELAFKIDLNSTP 640 
WD40-rpts                                                                                      

Query      641 HVNIETQNLALGVSSLIPGTNAPSNFSIGLPSNNESYFQMDFGNGQTDPLASVILPPNLLENLSPEDSVLVRRAQFTFFN 720 
WD40-rpts                                                                                      

Query      721 KTGLFQDVGSQRKVLVSYVMACSIGNITIQNLKDPVQIKIKHTRTQEVHHPICAFWDMNKNKSFGGWNTSGCVAHSDLDA 800 
WD40-rpts                                                                                      

Query      801 GETICLCSHFTHFGVLMDLPRSASQIDGRNTKVLTFITYIGCGISAIFSAATLLTYVAFEKLRRDYPSKILMNLSSALLF 880 
WD40-rpts                                                                                      

Query      881 LNLIFLLDGWVTSFGVAGLCTAVAALLHFFLLATFTWMGLEAIHMYIALVKVFNTYIHRYILKFCIIGWGLPALVVSIIL 960 
WD40-rpts                                                                                      

Query      961 VSRRQNEVYGKESYGKDQDDEFCWIQDPVVFYVSCAGYFGVMFFLNVAMFIVVMVQICGRNGKRSNRTLREEVLRNLRSV 1040
WD40-rpts                                                                                      

Query     1041 VSLTFLLGMTWGFAFFAWGPLNIPFMYLFSIFNSLQGLFIFIFHCAMKENVQKQWRRHLCCGRFRLADNSDWSKTATNII 1120
WD40-rpts                                                                                      

Query     1121 KKSSDNLGKSLSSSSIGSNSTYLTSKSKSSSTTYFKRNSHSDNFS 1165
WD40-rpts                                                   

2 WD40-repeats found in QUERY=ENSMUSP00000043055 (Len=1165):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   103-141      2.83  231.45  0.04630       27.5%     11.50
  WD 2:  Seg 20   296-337      2.84  232.08  0.04543       20.0%     18.07

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  103-141    NGESQTKFCGATAKGLSFNSSVN--EMH-VSFSSDFSIQKKG
   WD 2  296-337    DRDEVASLRGSIYNFRLWNFTMDLKALSNLSCSVSGNVIDWH

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPD--GKRLVSGSEDGTIKVWD