Accession: ENSMUSP00000042509 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = ENSMUSP00000042509 (Len=676)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000042509, Len=676):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVND 80  
WD40-rpts                           (________________WD 1_______________)(____________________W

Query       81 VVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVT 160 
WD40-rpts      D 2___________________)   (_________________WD 3________________)            (__

Query      161 TSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLHRDGTQCLSGSSDGTIRLWSLG 240 
WD40-rpts      _______________WD 4________________)   (_________________WD 5________________)(_

Query      241 QQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKST 320 
WD40-rpts      _________________WD 6__________________)   (__________________WD 7______________

Query      321 VNKWTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGK 400 
WD40-rpts      ____)                        (_________________WD 8________________)            

Query      401 VDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVT 480 
WD40-rpts                             (_______________________WD 9_______________________)     

Query      481 PMDEEENEVNHVSGGQESRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETEAMLLNETVPQWVIDITVDKNMP 560 
WD40-rpts                                                                                      

Query      561 KFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKPEQEKEEDIAVLAEEKIEL 640 
WD40-rpts                                                                                      

Query      641 LCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYRQKST 676 
WD40-rpts

9 WD40-repeats found in QUERY=ENSMUSP00000042509 (Len=676):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    22-58       7.66  431.02  9.7e-05       22.5%     48.13
  WD 2:  Seg  5    59-103      8.96  484.63  1.8e-05       35.0%     53.79
  WD 3:  Seg  9   107-145      9.14  492.11  1.4e-05       30.0%     54.74
  WD 4:  Seg 13   158-196      8.04  446.64  5.9e-05       30.0%     46.65
  WD 5:  Seg 16   200-238      9.90  523.48  5.5e-06       40.0%     54.01
  WD 6:  Seg 20   239-280      8.27  456.44  4.4e-05       27.5%     54.66
  WD 7:  Seg 24   284-325      5.35  335.71  0.00186        7.5%     54.37
  WD 8:  Seg 29   350-388      5.42  338.42  0.00171        7.5%     44.57
  WD 9:  Seg 36   424-475      3.68  266.70  0.01574       10.0%     15.76

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   22-58     RDE--------VEK-YNRNGVNALQLDPAL---NRLFTAGRDSIIRI-----------WS
   WD 2   59-103    VNQHKQDPYIASME-HHTDWVNDVVLCCNG---KTLISASSDTTVKV-----------WN
   WD 3  107-145    -GF-----CMSTLR-THKDYVKALAYAKDK---ELVASAGLDRQIFL-----------WD
   WD 4  158-196    -TV-----TTSSLS-GNKDSIYSLAMNQLG---TIIVSGSTEKVLRV-----------WD
   WD 5  200-238    -CA-----KLMKLK-GHTDNVKALLLHRDG---TQCLSGSSDGTIRL-----------WS
   WD 6  239-280    LGQ---QRCIATYR-VHDEGVWALQVNDAF---THVYSGGRDRKIYC-----------TD
   WD 7  284-325    -PD-----IRVLIC-EEKAPVLKMELDRSADPPPAIWVATTKSTVNK-----------WT
   WD 8  350-388    -CT-----QPDQVI-KGGASIIQCHILNDK---RHILTKDTNNNVAY-----------WD
   WD 9  424-475    LKT-----GMLTITLDESDCFAAWVSAKDA---GFSSPDGSDPKLNLGGLLLQALLEYWP

   WD40 Template    TGE-----CLRTLS-GHTSGVTSVSFSPDG---KRLVSGSEDGTIKV-----------WD