Input parameters:

  Query = ENSMUSP00000042272 (Len=349)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000042272, Len=349):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDIENVILAKVQEDEEDNSEAILKSDKLHQDLFYMERVLMENVFQPKLAAYRQLPVYKEHEPEEPEETLQVENLKVAEDE 80  
WD40-rpts                                                                                      

Query       81 PKKEDEEEVEMELELEIATEQSTIPANLERLWSFSCDLTKGLNVSSLSWNKANPDLLAVGYGNFGFREQKKGMACCWSIK 160 
WD40-rpts                                                                                    (_

Query      161 NPMWPERIYQSSYGVTSVDFSNSSPNLLAVGYHNGTVAIYNVQSSHNIPVLDSSESPQKHLGPVWQVQWIEQDRGTTGDD 240 
WD40-rpts      __________________WD 1__________________)           (____________________WD 2___

Query      241 KREILVSISADGRISKWIIRKGLDCHDLMRLKRTTATGGKKGGEKEKKGEALISRQAPGMCFAFHPKDTNIYLAGTEEGL 320 
WD40-rpts      _________________)                                                              

Query      321 IHKCSCSYNEQYLETYRGHKFGPSDRECC 349 
WD40-rpts                                   

2 WD40-repeats found in QUERY=ENSMUSP00000042272 (Len=349):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   159-201      2.97  237.26  0.03881       27.5%     47.02
  WD 2:  Seg  9   213-258      3.24  248.67  0.02740       30.0%     42.06

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  159-201    IKNPMWPERIYQSSYGVTSVDFSNSSPN---------LLAVGYHNGTVAIYN
   WD 2  213-258    SSE-----SPQKHLGPVWQVQWIE-QDRGTTGDDKREILVSISADGRISKWI

   WD40 Template    TGECL--RTLSGHTSGVTSVSFSP-DGK---------RLVSGSEDGTIKVWD