Input parameters:

  Query = ENSMUSP00000041826 (Len=480)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000041826, Len=480):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTVTKMSWRPQYRSSKFRNVYGKAANREHCFDGIPITKNVHDNHFCAVNARFLAIVTESAGGGSFLVIPLEQTGRIEPNY 80  
WD40-rpts                                                                                  (___

Query       81 PKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPDGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDY 160 
WD40-rpts      ______________WD 1_________________)          (_________________WD 2____________

Query      161 KVLIWNLDIGEPVKMIDCHTDVILCMSFNTDGSLLTTTCKDKKLRVIEPRSGRVLQEANCKNHRVNRVVFLGNMKRLLTT 240 
WD40-rpts      _____)   (_________________WD 3________________)   (___________________WD 4_____

Query      241 GVSRWNTRQIALWDQEDLSMPMIEEEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQK 320 
WD40-rpts      _____________)      (_________________WD 5________________)(___________________W

Query      321 GLGVMPKHGLDVSACEVFRFYKLVTLKGLIEPISMIVPRRSDSYQEDIYPMTPGTEPALTPDEWLGGINRDPVLMSLKEG 400 
WD40-rpts      D 6__________________)                                                          

Query      401 YKKSSKVVFKAPIREKKSVVVNGIDLLENVPPRTENELLRMFFRQQDEIRRLKEELAQKDIRLRQLQLELKNLRNNPKNC 480 
WD40-rpts                                                                                      

6 WD40-repeats found in QUERY=ENSMUSP00000041826 (Len=480):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    77-116      6.95  401.87  0.00024       22.5%     46.46
  WD 2:  Seg  9   127-166      6.61  387.54  0.00037       30.0%     52.97
  WD 3:  Seg 13   170-208      8.69  473.71  2.6e-05       27.5%     55.22
  WD 4:  Seg 17   212-254      5.37  336.68  0.00181       30.0%     44.16
  WD 5:  Seg 21   261-299      5.26  331.81  0.00210       12.5%     52.74
  WD 6:  Seg 25   300-342      3.58  262.40  0.01797       12.5%     39.23

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   77-116    -E---PNYPKVCGHQGNVLDIKWNPFI-DNIIA----SCSEDTSVRIWE
   WD 2  127-166    -T---EALLELHGHSRRVGLVEWHP-TTNNILF----SAGYDYKVLIWN
   WD 3  170-208    -G---EPVKMIDCHTDVILCMSFNT-D-GSLLT----TTCKDKKLRVIE
   WD 4  212-254    -G---RVLQEANCKNHRVNRVVFLG-N-MKRLLTTGVSRWNTRQIALWD
   WD 5  261-299    -P---MIEEEIDGLSGLLFPFYDAD-T-HMLYL----AGKGDGNIRYYE
   WD 6  300-342    ISTEKPYLSYLMEFRSPAPQKGLGV-M-PKHGL----DVSACEVFRFYK

   WD40 Template    TG---ECLRTLSGHTSGVTSVSFSP-D-GKRLV----SGSEDGTIKVWD