Input parameters:

  Query = ENSMUSP00000041768 (Len=828)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000041768, Len=828):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDLAYVCEWEKWAKSTYCPSLPLACAWSCRNLIAFTTDLRNDDQDLTHMIHILDTEHPWEVHSVSSGHSEAITCLEWDQS 80  
WD40-rpts                                                                (_________________WD 1

Query       81 GSRLLSADADGQIKCWSMADHLANSWESSVGSQVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFSRVKFSPSLTLFG 160 
WD40-rpts      ________________)                                                               

Query      161 GKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVAAADGSSASPVKFYKVCVSVVSEK 240 
WD40-rpts                                                                                      

Query      241 CRIDTEILPSLFMRCTTDPNRKDRFPAITHLKFLARDMSEQVLLCASSQTSSLVECWSLRKEGLPVNNIFQQISPVVGDK 320 
WD40-rpts                                                                                      

Query      321 QPMILKWRILSATNDLDRVSAVALPKLPISLTNTDLKVASDTQFYPGLGLALAFQDGSVHMVHRLSLQTMAVFYSSAPRS 400 
WD40-rpts                              (_________________WD 2________________)                 

Query      401 LDEPALKRPRTTCPAVHFKAMQLSWTSLALVGIDNHGKLSMLRISPSLGHPLEPKLALQHLLFLLEYCMVTGYDWWDILL 480 
WD40-rpts                                                                                      

Query      481 HVQPGMVQSLVERLHEEYTRQKPALQQVLSTRILAMKASLCKLSPCTVARVCDYHTKLFLMAITSTLKSLLRPHFLNTPD 560 
WD40-rpts                                                                                      

Query      561 KSPGDRLAEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLYLLVSLPNQGSPLRPGHSFLRDGTSLG 640 
WD40-rpts                                                                                      

Query      641 MLRELMVVIRIWGLLKPSCLPVYTATSDTQDSMSLLFRLLTKLWICCRDEGAASEPDEGLVDECCLLPSQLLVPNLDWLP 720 
WD40-rpts                                                                                      

Query      721 ASDGLVSRLQPKQPLRLRFGRAPTLPSSTSTLQLDGLTRAPGQPKIDHLRRLHLGAYPTEECKACTRCGCVTMLKSPNKT 800 
WD40-rpts                                                                                      

Query      801 TAVTQWEQRWIKNCLCGGLWRRVPLSCS 828 
WD40-rpts                                  

2 WD40-repeats found in QUERY=ENSMUSP00000041768 (Len=828):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    59-97       7.24  413.65  0.00017       35.0%     52.20
  WD 2:  Seg 21   345-383      3.00  238.76  0.03708       17.5%     29.64

Multiple sequence alignment of 2 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   59-97     WEVHSVSSGHSEAITCLEWDQSGSRLLSADADGQIKCWS
   WD 2  345-383    PKLPISLTNTDLKVASDTQFYPGLGLALAFQDGSVHMVH

   WD40 Template    GECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD