Input parameters:

  Query = ENSMUSP00000040863 (Len=731)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000040863, Len=731):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLFNSVLRQPQLGVLRNGWSSHYPLQSLLSGYQCNCNDEHTSYGETGVPVPPFGCTFCTAPSMEHILAVANEEGFVRLYN 80  
WD40-rpts                                    (______________________WD 1______________________)

Query       81 TESQTSKKTCFKEWMAHWNAVFDLAWVPGELKLVTAAGDQTAKFWDVRAGELMGTCKGHQCSLKSVAFPKFQKAVFSTGG 160 
WD40-rpts             (_________________WD 2________________)   (_________________WD 3_________

Query      161 RDGNIMIWDTRCNKKDGFYRQVNQISGAHNTADKQTPSKPKKKQNSKGLAPAVDSQQSVTVVLFQDENTLVSAGAVDGII 240 
WD40-rpts      ________)______________WD 4______________)   (_________________WD 5_____________

Query      241 KVWDLRKNYTAYRQEPIASKSFLYPGTSTRKLGYSSLVLDSTGSTLFANCTDDNIYMFNMTGLKTSPVAVFNGHQNSTFY 320 
WD40-rpts      ___)          (____________________WD 6___________________)     (_______________

Query      321 VKSSLSPDDQFLISGSSDEAAYIWKVSMPWHPPTVLLGHSQEVTSVCWCPSDFTKIATCSDDNTLKIWRLNRGLEEKPGD 400 
WD40-rpts      ___WD 7_________________)    (_________________WD 8_________________)   (_______

Query      401 KHSIVGWTSQKKKEVKACPVTVPSSQSTPAKAPRAKSSPSISSPSSAACTPSCAGDLPLPSSTPTFSVKTTPATTRSSVS 480 
WD40-rpts      ___________WD 9__________________)   (_________________WD10________________)    

Query      481 RRGSISSVSPKPLSSFKMSLRNWVTRTPSSSPPVTPPASETKISSPRKALIPVSQKSSQADACSESRNRVKRRLDSSCLE 560 
WD40-rpts                        (___________WD11___________)                                  

Query      561 SVKQKCVKSCNCVTELDGQAESLRLDLCCLSGTQEVLSQDSEGPTKSSKTEGAGTSISEPPSPVSPYASEGCGPLPLPLR 640 
WD40-rpts                                                                                      

Query      641 PCGEGSEMVGKENSSPENKNWLLAIAAKRKAENSSPRSPSSQTPSSRRQSGKTSPGPVSLNVGGHMSYLKGTRCSSQDCL 720 
WD40-rpts                                                                                      

Query      721 GIRNNFALLLH 731 
WD40-rpts                 

11 WD40-repeats found in QUERY=ENSMUSP00000040863 (Len=731):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    31-80       4.39  296.07  0.00635       20.0%     42.98
  WD 2:  Seg  8    88-126      9.09  490.17  1.5e-05       27.5%     45.59
  WD 3:  Seg 11   130-169      8.64  471.43  2.8e-05       37.5%     55.27
  WD 4:  Seg 14   169-202      3.38  254.37  0.02300       10.0%      8.44
  WD 5:  Seg 16   206-244      8.24  455.21  4.6e-05       32.5%     52.48
  WD 6:  Seg 21   255-299      7.37  419.11  0.00014       17.5%     43.00
  WD 7:  Seg 24   305-345      7.98  444.12  6.4e-05       32.5%     51.09
  WD 8:  Seg 28   350-389      8.17  452.34  5.0e-05       35.0%     47.11
  WD 9:  Seg 32   393-434      5.77  353.12  0.00108       15.0%     12.87
  WD10:  Seg 34   438-476      2.84  231.94  0.04562       10.0%     -12.95
  WD11:  Seg 35   499-526      3.48  258.26  0.02041       12.5%      1.15

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-80     -G-----YQCNCNDEHTSYGETGVPVPPFGCTF--CTAP-SMEH--ILAVANEEGFVRLYN
   WD 2   88-126    -K-----TCFKEWMAHWNAVFD----------L--AWVP-GELK---LVTAAGDQTAKFWD
   WD 3  130-169    -G-----ELMGTCKGHQCSLKS----------V--AFPK-FQKA--VFSTGGRDGNIMIWD
   WD 4  169-202    -D-----TRCNKKDGFYRQVNQ----------I--SGAH-N--------TADKQTPSKPKK
   WD 5  206-244    -S-----KGLAPAVDSQQSVTV----------V--LFQD-ENTL---VSAGAVDGIIKVWD
   WD 6  255-299    EPIASKSFLYPGTSTRKLGYSS----------L--VLDS-TGST---LFANCTDDNIYMFN
   WD 7  305-345    -T-----SPVAVFNGHQNSTFY----------VKSSLSP-DDQF---LISGSSDEAAYIWK
   WD 8  350-389    -W-----HPPTVLLGHSQEVTS----------V--CWCPSDFTK---IATCSDDNTLKIWR
   WD 9  393-434    -G-----LEEKPGDKHSIVGWT----------S--QKKK-EVKACPVTVPSSQSTPAKAPR
   WD10  438-476    -S-----PSISSPSSAACTPSC----------A--GDLP-LPSS---TPTFSVKTTPATTR
   WD11  499-526    -----------------SLRNW----------V--TRTP-SSSP---PVTPPASETKISSP

   WD40 Template    TG-----ECLRTLSGHTSGVTS----------V--SFSP-DGKR---LVSGSEDGTIKVWD