Input parameters:

  Query = ENSMUSP00000040647 (Len=677)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000040647, Len=677):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAKVNITRDLIRRQVKERGALSFERRYHVTDPFIRRLGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVWDPLHHK 80  
WD40-rpts                                         (_________________WD 1_________________)    (

Query       81 KLLSMHTGHTANIFSVKFLPHAGDRILITGAADSKVHVHDLTVKETIHMFGDHTNRVKRIATAPMWPNTFWSAAEDGLIR 160 
WD40-rpts      __________________WD 2_________________)   (_________________WD 3_______________

Query      161 QYDLRENSKHSEVLIDLTEYCGPMVEAKCLTVNPQDNNCLAVGASGPFVRLYDIRMIHNHRKSMRQSPSAGVHTFCDRQK 240 
WD40-rpts      __)(______________________WD 4______________________)   (_________________WD 5__

Query      241 PLPDGAAQYYVAGHLPVKLPDYNSRLRVLVATYVTFSPNGTELLVNMGGEQVYLFDLTYKQRPYTFLLPRKCHSVEVQNG 320 
WD40-rpts      ______________)(__________________WD 6_________________)       (________________

Query      321 KMSTNGVSNGVSNGLHLHSNGFRLPESKGCISPQVELPPYLERVKQQANEAFACQQWTQAIQLYSQAVQKAPHNAMLYGN 400 
WD40-rpts      ___WD 7__________________)                                                      

Query      401 RAAAYMKRKWDGDHYDALRDCLKAISLNPCHLKAHFRLARCLFELKYVAEALECLDDFKGKFPEQAHSSACDALGRDITA 480 
WD40-rpts                                                  (_________________WD 8______________

Query      481 ALFSKSDGEEKKAAGGGGGPVRLRSTSRKDSISEDEMVLRERSYDYQFRYCGHCNTTTDIKEANFFGSNAQYIVSGSDDG 560 
WD40-rpts      ___)                                       (___________________WD 9_____________

Query      561 SFFIWEKETTNLVRVLQGDESIVNCLQPHPSYCFLATSGIDPVVRLWNPRPESEDLTGRVVEDMEGASQANQRRMNANPL 640 
WD40-rpts      _____)   (_________________WD10________________)(____________________WD11_______

Query      641 EAMLLDMGYRITGLSSGGAGASDDEDSAEGQVQCRPS 677 
WD40-rpts      ____________)                        

11 WD40-repeats found in QUERY=ENSMUSP00000040647 (Len=677):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    36-75      10.52  549.37  2.4e-06       32.5%     49.07
  WD 2:  Seg  6    80-120      7.47  423.09  0.00012       32.5%     51.67
  WD 3:  Seg 10   124-163      7.60  428.70  0.00010       27.5%     52.84
  WD 4:  Seg 14   164-213      6.10  366.77  0.00071       20.0%     50.70
  WD 5:  Seg 18   217-255      6.49  382.88  0.00043       12.5%      7.89
  WD 6:  Seg 20   256-296      7.02  404.83  0.00022       20.0%     35.39
  WD 7:  Seg 24   304-346      4.34  293.75  0.00683       12.5%      9.82
  WD 8:  Seg 30   445-484      6.16  369.24  0.00066        7.5%     11.59
  WD 9:  Seg 34   524-566      7.59  428.22  0.00011       27.5%     50.93
  WD10:  Seg 38   570-608      8.43  462.78  3.6e-05       22.5%     53.51
  WD11:  Seg 42   609-653      6.33  375.95  0.00053       10.0%     25.68

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   36-75     RLG---------LE-AELQGHSGCVNCLE----WNE-K-G--DLLASGS----D-----DQHTIVWD
   WD 2   80-120    -KK---------LL-SMHTGHTANIFSVK----FLP-H-AGDRILITGA----A-----DSKVHVHD
   WD 3  124-163    -KE---------TI-HMFGDHTNRVKRIA----TAP-MWP--NTFWSAA----E-----DGLIRQYD
   WD 4  164-213    LRENSKHSEVLIDL-TEYCGPMVEAKCLT----VNPQD-N--NCLAVGA----S-----GPFVRLYD
   WD 5  217-255    -IH---------NH-RKSMRQSPSAGVHT----FCD-R-Q--KPLPDGA----A-----QYYVAGHL
   WD 6  256-296    PVK---------LPDYNSRLRVLVATYVT----FSP-N-G--TELLVNM----G-----GEQVYLFD
   WD 7  304-346    -YT---------FL-LPRKCHSVEVQNGK----MST-N-G--VSNGVSNGLHLH-----SNGFRLPE
   WD 8  445-484    LKY---------VA-EALECLDDFKGKFP----EQA-H-S--SACDALG----R-----DITAALFS
   WD 9  524-566    -YD---------YQ-FRYCGHCNTTTDIKEANFFGS-N-A--QYIVSGS----D-----DGSFFIWE
   WD10  570-608    -TN---------LV-RVLQGDESIVNCLQ----PHP-S-Y--CFLATSG----I-----DPVVRLWN
   WD11  609-653    PRP---------ES-EDLTGRVVEDMEGA----SQA-N-Q--RRMNANP----LEAMLLDMGYRITG

   WD40 Template    TGE---------CL-RTLSGHTSGVTSVS----FSP-D-G--KRLVSGS----E-----DGTIKVWD