WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: ENSMUSP00000040465 [Mus musculus] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = ENSMUSP00000040465 (Len=5034) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (ENSMUSP00000040465, Len=5034): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGHAGRQFQALLWKNWICRLRHPVLSLAEFFWPCILFMILTVLRFQEPPRHRENCYLQARDLPSRGVLPFVQGLLCNTGS 80
WD40-rpts
Query 81 SCRNISFESSMDHHFRLSRFQTASDDRKVSSLAFLNEIQDLAEDIFETMDKAKNLQKLWLKRSETPGSSYGSGFLTMDLN 160
WD40-rpts
Query 161 KTEDVISKLESLHQQPHIWDFLHSLPRLYMSSAHLEDSMGAVTHFLQAGLNSLASLGDLDWLPLHQTIPQVSRHVLNVTI 240
WD40-rpts
Query 241 STLRFLQQHSAVVNETIYHLSLKNIVWDPQKVQSDLKSQFGFNDFQMQHILNYSAKLEEIPTHSFLERMVCSILSNTSED 320
WD40-rpts
Query 321 EAESKGYRADCHPKWSAVKNYIIHAVSWLKLYGQVFDQWQQGSLLQSLLAGASHSLAALREQFKQQSESWKVVEALHTAL 400
WD40-rpts
Query 401 LILNDSLAADVPRDYHLFPQIFQHLSKLQHALSDLSPWPALKRLLLLDTVLRNMIAQDLRFVQEFLSYLERSAKDFIPAG 480
WD40-rpts
Query 481 SEGWRLEKDVLFQGLNQLLTKNASALCLNGHLSQEAALPTGNSSIWRSVWGVLCHTLFFNETSVLNELLRAVKDAGHSLQ 560
WD40-rpts
Query 561 AVIAGHTNGSVSEHGGHFGWQDLGTQLSEISLTCSRVFQLPRADTSPENSFSPGGCESQLVSIVVSHILEDVQMSTQKKS 640
WD40-rpts
Query 641 YWKILSKIVRKTCELARYVNMNGSLQNSGLISFSEDSPCYTQDMNWKVIIDNYFVFFNNFKKSPITSITTAFNFTKHLLV 720
WD40-rpts
Query 721 VDQKLHTLENGQMNILLSFVEFVEKLLSNPSGSFPAPEFDNLSSLTELVFNATVSWLTHLKRLKADSHDAAPQELLEFDH 800
WD40-rpts
Query 801 LVTEKIQRLKNHWMKKGSKNILNFLELILLEMNSELQEFRLNGIPQEERTNIEGFSTLVNFSVAEYEKILCKRFTFSQLF 880
WD40-rpts
Query 881 HSYWPKSPAINADFIHLSETIIQSLCGLSFLTQEQVSIALNTVSALQNTSELFSALSEPQKQELDNFLTHVYINVFKDKN 960
WD40-rpts
Query 961 IALFLQTYSSFYRYIHKFFNIQNREPLIAYFTQISRHILDLIKQFNIQNIREALSFLSETTEALGMISEVSHCQQLLSIF 1040
WD40-rpts
Query 1041 NFLELQAWSLMARGGPAEAVIHASLTGLKQLFAADEGFRVSLLQYVTQCFNGSAATLVASECFIQENATISSVNYSGNEG 1120
WD40-rpts
Query 1121 SSLPFPWTQFFSNLSVNGSAISEFTAIHCTLSWIQTWAEIWRSIAQIFKLELSIFTPLHVGITQLLDDLGNYGNISKDCQ 1200
WD40-rpts
Query 1201 GIVPTYLTARLILNLFRNITQENNFHDWDGLQDLRDLWVAFGNELTTVQSLNLDQVEKTFITMETSLHQLKTFPMKINAS 1280
WD40-rpts
Query 1281 REFLYSLFDVFIELSKASDYVDRNVELINNFLSDDLPDHQAKFASIIKELKETILFLRHVSQGRTLSACADIFQRLTELI 1360
WD40-rpts
Query 1361 FEDSLLLVNTSNKPEHILAMLSSMFSSKNTSSSLEGCITWIDIINHLCIMYNSSSLPSHSYNILGSFKDMGDKMSSALNI 1440
WD40-rpts
Query 1441 LTWMLNKKRPICPWNESNINCVNIYLKDITDFLNIIVTTGLEKENVPNVEILLSLFNDSTKQVDMIITNLTEDLNVASQS 1520
WD40-rpts
Query 1521 NWKHFKDLLLRPTEMSDDIPDQFQNIWQHIIALGKEMQKLLKGIFHSVLGNNFSSNTETMFSVFSTSPKEGDISHLGKSI 1600
WD40-rpts
Query 1601 YNLANYFALNLTHNLQNSSEVFPHEILKAVDLSIQLTRDVFNFLMPAVHFNIPQNSDHAQTLKKVTSLMQSLKKADIELL 1680
WD40-rpts
Query 1681 VGQLGENSEILMSFFKNLSRSGIDNLGVNMLVGLVEKFVDSSHSWSVSHLLRLSRLLPKDVVDTVLDVYYALPHIVGLLR 1760
WD40-rpts
Query 1761 RIVDKNITESLRDVYNFTLLHGITMFKITKEDFADVVKTLLDAVELVSDEPAIVPEALMCLTRVWCANYTTFRLEKNPKV 1840
WD40-rpts
Query 1841 EDCNIQRHMPSSFFHMVTSLLDLLHLPPPSDSQCIGEKYAVEITRRLACAVHDLADWNSILSELLEIFHVKNLLVKTLQG 1920
WD40-rpts
Query 1921 FWHKVLLFMSSSGIQGNGSIPELCPTSTIKQGALQIIEKLKYVNFTKFSLGETILDRLGNLDRILSLTKGTEKSVQNNIY 2000
WD40-rpts
Query 2001 LNLERLFKLISATWTLRNSTHYLLSPITNFLNGNYTGWSLFKNNRTSSNIEELWLDFKQIPKDLTSNWSLGQLLSDINKN 2080
WD40-rpts
Query 2081 IQGAGLQNTTVQLPQLLELLDSSPLKTSEIIEGFLFLIKPWLREYENGDFFRFIQSLLNAVASGNSTDVSRLARDFTMYL 2160
WD40-rpts
Query 2161 GYLRNQSREGNFDVGFFSHMLDQEHLTDLPVVQRLLESIVMNSVSSFAALSQETPPSFSGTNLQIADLMNLILKHAQSKN 2240
WD40-rpts
Query 2241 HAEAEGSTEDFLKQLPETFFSSVINGLHSDVTAEVSFVPRDKILEILKLDPFLTWMNKNPLMNIFSGLKTLYYLIKSSFS 2320
WD40-rpts
Query 2321 LDNRELSGVLKDLSHTHPWETTVKTDAEGHLDFFSVVTQFLSQVNSSEDLSKFNQNLRSVLYLVQESSTEMATIIDTVLH 2400
WD40-rpts
Query 2401 STSGACYSPYPMLQHSTVAKLSDLFSDVNSSFPLRSREILESTMRLFGTISQVGEESHVLESALEIFRTLTMLVNSTVEL 2480
WD40-rpts
Query 2481 GHLASTADSMVRLLNLAKIVSRKMATMLGTLSISSTEDSGKFLDTLYSFMLQSVPHHVKQITTLKKGDPFIVEKTKDLLI 2560
WD40-rpts
Query 2561 PFLDLAFGMIGVTPNVSQDSDVFSMPFSILSYINQSRDFSETLEGMAENLISIKISLRDWEHFVAMIKNRTQNFSIDAAD 2640
WD40-rpts
Query 2641 LWEEILGCLVPISNITTQMDFLKLYELSSTSHPQVPKQERTHDVIRYLDGMLTDNGTERETFLKMVIDLTLQALWNGLKE 2720
WD40-rpts
Query 2721 DNWDIFNLLLAFAQHPNDLLKAIESVVAVSSGIHSDYPDDFNQDSFSDLSLIQNTTRYQLAKAVLIGLGKAGFSREGLPL 2800
WD40-rpts
Query 2801 NNTQWTHFTRTLFHPDYNSFPNSTPHQNVTSAKDGRTKDEMMVILHGSEPMPYLQRFLKALFVSIEHWQEVPQAEQSVFE 2880
WD40-rpts
Query 2881 MCQVFQQLQKPMKTVKMLQRVEMMALRVLIIFAENPSLTKDILCAALSCKQGAMRHLILAALQGVTLVHRHYQEIGKIWF 2960
WD40-rpts
Query 2961 SPDQLDCERLSRNLSSALEGFKSILDNASSHRCTCQPLVGVVQQHIRRLTKSLEEVWMSKIPAMTFLSNFTVTEDVKIKD 3040
WD40-rpts
Query 3041 LMRNITKFTEDLRSFFHISEETIHSILEANISHSKVLSSVLTIALSGKCDEEILHLLLTFPESEKSWFVTRELCSLPGSQ 3120
WD40-rpts
Query 3121 VFSLLVMMGQNLNLRNLIYKTLIPSEANGLLKSLLDVVASLSSILARAQHALEYLPEFLHTFKITALLDMPDFQQVSSKG 3200
WD40-rpts
Query 3201 QTRSSAFASFQSVMKLLCKDQESFLSNSNMFINLPRVNELLEDNKEKFNIPHDSTPFCLKLYQEILQSPNGALVWSFLKP 3280
WD40-rpts
Query 3281 VLHGKILYTPNSPEINEVIQKANYTFYFVDKIKVLSETFLKISKLFQGSGNGQMFNQLQDALRNKFIRNFVESQLHIDMD 3360
WD40-rpts
Query 3361 KLTEDLQTYGRMLDKMFNHVEAGHFRFLGGMLANLSSCVVLDRFQAVETVDTLETKAHELMQQNSFLASIIFNSSLRHRH 3440
WD40-rpts
Query 3441 IRSAPHKLPPHVTYTIRTNVLYSMRTDMIKNPSWKFHPQNLPAGGFKYNYIFVPLQDMIERAIIVVQTGQESLEPTTQAQ 3520
WD40-rpts
Query 3521 AAPYPCHTSDLFLNNVGFFFPLIMMLTWMVAVASMVRKLVYEREIQIEEYMRMMGLHPTIHFLSWFLENMATLALSSAAL 3600
WD40-rpts
Query 3601 AVILKMSGIFMHSDAFIIFLYLLDFGVSAVMMSYFLSVFFNQANTAALCTSLGYMISFLPYVVLLVLHNQLSFAIQTLLC 3680
WD40-rpts
Query 3681 LLSTTAFGQGVFFITFLEGQEEGIQWGNMYRAPEPGGMTFGWVCWMILFDAILYFLGGWYFSNLVPGTFGLGKPWYFPFT 3760
WD40-rpts
Query 3761 ASYWKSICGLMERRRCSLSSGLFFFNEDFGNKGLSQQNGPGEMEGGNPGVALISVTKEYEDHKVAVQELTLTFHRDQITA 3840
WD40-rpts (_____
Query 3841 LLGTNGAGKTTIISMLMGLFPPTSGTITINGKNLQTDLSKVREELGVCPQQDVLLDNLTVREHLMLFASIKAPWWTTKEL 3920
WD40-rpts _____________________WD 1__________________________)
Query 3921 QQQVNKTLDEVELTQHQHKPAGVLSGGMKRKLSIGIAFMGMSKTVVLDEPSSGVDPCSRRSLWDILLKYREGRTIIFTTH 4000
WD40-rpts
Query 4001 HLDEAEMLSDHVAVLQQGRLRCYAPPADLKETYGQGLTLTLSKQPSILETQEPKDVARVTSLIQIYIPQAFLKDSCGGEL 4080
WD40-rpts
Query 4081 TYTIPKDADRTCFKGLCQALDQNLQHLHLTGYGISDTTLEEVFLMLLQDTNKKSYITPDNKVEPQNERPVGPLSPHNVSP 4160
WD40-rpts
Query 4161 LSTPPEGALPEPIGGCQLLLGQAVALLRKRLLHTLRAWKSTTSDLLLPVLFVALAMGLFMVQPLAITYPPLKLTPGHYET 4240
WD40-rpts
Query 4241 AETYFFSSGNHGPDLTHVLLRKFRDQDPVCADAFRMNSSSWHRDPYSGPESQDSCGCLKCPNKSAGAPSLTNCLGHTLLN 4320
WD40-rpts
Query 4321 LSGYDVEEYLLVPSAKPRLGGWSFGGQIPNDAEDVKTNTSKPRTLAKVWYNQKGFHSLPSYLNHLNNLILWHHLPANAVD 4400
WD40-rpts
Query 4401 WRQYGITLYSHPYGGALLNEDRILESIRQCGVALCIVLGFSILSASIGSSVVRDRVTGAKRLQHISGLGHRTYWLINFLY 4480
WD40-rpts
Query 4481 DMLFYLVSVCLCVAVIGAFQLTAFTFRENLAATALLLALFGYAMIPWMYLMSRIFSSSDVAFISYISLNFIFGLCTMLMT 4560
WD40-rpts
Query 4561 TMPRLLAIISKAQNLQKIYNVLKWAFTIFPQFCLGQGLIELCYNQIKYDLTHNFGIDSYVSPFEMNFLGWIFVELTLQGT 4640
WD40-rpts
Query 4641 FLLLLRLMLHGDLLRWPRDHSVLQDIVKPAKDIDVETEQMRVLEGRTGGDMMVLCNLSKSYRSVFGGKTTAVHGISLGIP 4720
WD40-rpts
Query 4721 RGECFGLLGVNGAGKSTTFKILNGETPPSSGYTVIRTPQGDMVDLASAGKAGILIGYCPQQDALDELLTGWEHLQYYCRL 4800
WD40-rpts
Query 4801 RGIPKQYIPEVAADLVRRLHLESHVDKPVATYSGGTRRKLSTALALVGKPDILLLDEPSSGMDPCSKRYLWQTITQEVRD 4880
WD40-rpts (
Query 4881 GCAAVLTSHSMEECEALCTRLAIMVDGSFRCLGPPQHIKNRFGDGYTVKVWLHKEGSQPSAVSDCLKLHFPGIQFKGQRL 4960
WD40-rpts ________________________WD 2_______________________)
Query 4961 NLLEYHVQKSWECLADLFKVLENNKSLLNIEHYSISQTTLEQVFVNFATEQLQTPCFPVDSPSTDAQHPCYTRI 5034
WD40-rpts
 2 WD40-repeats found in QUERY=ENSMUSP00000040465 (Len=5034): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 32 3835-3892 2.79 230.11 0.04823 25.0% 15.32 WD 2: Seg 52 4880-4932 3.50 259.41 0.01970 22.5% 23.30Multiple sequence alignment of 2 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 3835-3892 RDQITALLGTNG-------AGKTTIISMLMGLFPPTSGTITINGKNLQT-------DLSKVREELGVCPQQD WD 2 4880-4932 DG-CAAVLTSHSMEECEALCT-------------RLAIMVDGSFRCLGPPQHIKNRF-----GDGYTVKVWL WD40 Template TGECLRTLSGHT-------SG-------------VTSVSFSPDGKRLVS-------G-----SEDGTIKVWD |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |