Input parameters:

  Query = ENSMUSP00000040321 (Len=453)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000040321, Len=453):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAGAGGGGCPAGGNDFQWCFSQVKGAVDEDVAEADIISTVEFNYSGDLLATGDKGGRVVIFQREQENKGRAHSRGEYNVY 80  
WD40-rpts                             (_________________WD 1________________)                  

Query       81 STFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAHFLLSTNDKTIKLWKISERDKRAEGYNLKDEDGRLRDPFRITALRV 160 
WD40-rpts                 (________________WD 2________________)                               

Query      161 PILKPMDLMVEASPRRIFANAHTYHINSISVNSDHETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF 240 
WD40-rpts                 (_________________WD 3________________)            (_________________

Query      241 HPHQCNVFVYSSSKGTIRLCDMRSSALCDRHAKFFEEPEDPSSRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLN 320 
WD40-rpts      WD 4________________)                   (________________WD 5________________)  

Query      321 MEGRPVETHQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSAIMTGSYNNFFRMFDRNTRRDVTLEASRENSKPRASLKP 400 
WD40-rpts                                                        (_____________________WD 6____

Query      401 RKVCTGGKRKKDEISVDSLDFNKKILHTAWHPMESIIAVAATNNLYIFQDKIN 453 
WD40-rpts      ________________)                                    

6 WD40-repeats found in QUERY=ENSMUSP00000040321 (Len=453):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    24-62       7.49  424.07  0.00012       17.5%     41.38
  WD 2:  Seg  6    92-129      4.34  293.92  0.00679       17.5%     43.74
  WD 3:  Seg 11   172-210      7.75  434.70  8.6e-05       22.5%     49.93
  WD 4:  Seg 16   223-261      6.12  367.29  0.00070       25.0%     39.30
  WD 5:  Seg 20   281-318      6.66  389.88  0.00035       25.0%     41.96
  WD 6:  Seg 26   371-417      5.34  335.39  0.00188       12.5%      6.85

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   24-62     KG-AVD-------EDVAEADIISTVEFNY--SGDLLATGDKGGRVVIFQ
   WD 2   92-129    YLKSL-----------EIEEKINKIRWLPQQNAAHFLLSTNDKTIKLWK
   WD 3  172-210    ASPRRI-------FANAHTYHINSISVNS--DHETYLS-ADDLRINLWH
   WD 4  223-261    IKP--A-------NMEELTEVITAAEFHP-HQCNVFVYSSSKGTIRLCD
   WD 5  281-318    -PSSRS-------FFSEIISSISDVKFSH--SGRYMMTRD-YLSVKVWD
   WD 6  371-417    FFRMFDRNTRRDVTLEASRENSKPRASLK--PRKVCTGGKRKKDEISVD

   WD40 Template    TGECLR-------TLSGHTSGVTSVSFSP--DGKRLVSGSEDGTIKVWD