Input parameters:

  Query = ENSMUSP00000039340 (Len=270)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000039340, Len=270):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEAEAADAPPGRVEAALSCFSFNQDCTSLAIGTKAGYKLFSLSSVEQLDQVHGSNEIPDVYIVERLFSSSLVVVVSHTKP 80  
WD40-rpts        (_________________WD 1________________)   (___________________WD 2____________

Query       81 RQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTVLDIPSNPTGLCALSINHSNSYLAYP 160 
WD40-rpts      ______)(__________________WD 3_________________)   (__________________WD 4______

Query      161 GSQSTGEIVLYDGNSLKTVCTIAAHEGTLAAITFNSSGSKLASASEKGTVIRVFSVPEGQKLYEFRRGMKRYVTISSLVF 240 
WD40-rpts      ___________)   (_________________WD 5_________________)(____________________WD 6

Query      241 SMDSQFLCASSNTETVHIFKMEHLTDSCET 270 
WD40-rpts      ___________________)          

6 WD40-repeats found in QUERY=ENSMUSP00000039340 (Len=270):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     3-41       6.82  396.31  0.00028       15.0%     41.21
  WD 2:  Seg  4    45-87       6.56  385.47  0.00040       20.0%     46.04
  WD 3:  Seg  8    88-128      6.14  368.42  0.00067        7.5%     24.96
  WD 4:  Seg 12   132-172      6.75  393.50  0.00031       15.0%     49.31
  WD 5:  Seg 16   176-215      8.43  462.82  3.6e-05       30.0%     56.95
  WD 6:  Seg 20   216-260      7.33  417.64  0.00015       22.5%     47.73

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    3-41     AEAA-----DAPPG-RVEA----ALSCFSFNQDCTSLAIGT-KAG--YKLFS
   WD 2   45-87     -VEQ-----LDQVH-GSNEIPDVYIVERLFSSSLVVVVSHTKPRQ--MNVYH
   WD 3   88-128    FKKG-----TEICNYSYSS----NILSIRLNRQRLLVCLEESIYI--HNIKD
   WD 4  132-172    -LKT-----VLDIP-SNPT----GLCALSINHSNSYLAYPGSQSTGEIVLYD
   WD 5  176-215    -LKT-----VCTIA-AHEG----TLAAITFNSSGSKLASASEKGT-VIRVFS
   WD 6  216-260    VPEGQKLYEFRRGM-KRYV----TISSLVFSMDSQFLCASSNTET--VHIFK

   WD40 Template    TGEC-----LRTLS-GHTS----GVTSVSFSPDGKRLVSGSEDGT--IKVWD