Input parameters:

  Query = ENSMUSP00000039301 (Len=875)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000039301, Len=875):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSGTKPDILWAPHQVDRFVVCDSELSLYHVESAVNSELKAGSLRLSEDSAATLLSINSDTPYMKCVAWYLNYDPECLLAV 80  
WD40-rpts                                                                                      

Query       81 GQANGRVVLTSLGQDHNSKFKDLIGKEFVPKHARQCNTLAWNPLDSNWLAAGLDKHRADFSVLIWDICSKYTPDIVPMEK 160 
WD40-rpts                 (_________________________WD 1________________________)              

Query      161 VRLSAGEAETTLLVTKPLYELGQNDASLSLCWLPRDQKLLLAGMHRNLAIFDLRNTSQKMFVNTKAVQGVTVDPYFHDRV 240 
WD40-rpts                                                          (_________________WD 2______

Query      241 ASFYEGQVAIWDLRKFEKPVLTLTEQPKPLTKVAWCPTRTGLLATLTRDSNIIRLYDMQHTPTPIGDETEPTIIERSVQP 320 
WD40-rpts      ___________)    (__________________WD 3_________________)                       

Query      321 CDNYIASFAWHPTSQNRMIVVTPNRTMSDFTVFERISLAWSPITSLMWACGRHLYECAEEESDNSLEKDIATKMRLRALS 400 
WD40-rpts                                                                                      

Query      401 RYGLDTEQVWRNHILAGNEDPQLKSLWYTLHFMKQYTEDNDQKSPGNKGSLVYAGIKSIVKSSLGMVESSRHNWSGLDKQ 480 
WD40-rpts                                                                                      

Query      481 TDIQNLNEERILALQLCGWIKKGTDVDVGPFLNSLVQEGEWERAAAVALFNLDIRRAIQILNEGASSEKGDLNLNVVAMA 560 
WD40-rpts                                                                                      

Query      561 LSGYTDEKNSLWREMCSTLRLQLNNPYLCVMFAFLTSEAGAYDGVLYENKVAVRDRVAFACKFLGDAQLNKYIEKLTNEM 640 
WD40-rpts                                                                                      

Query      641 KEAGNLEGILLTGLTKDGVDLMESYVDRTGDVQTASYCMLQGSPLDVLKDERVQYWIENYRNLLDAWRFWHKRAEFDIHR 720 
WD40-rpts                                                                                      

Query      721 SKLDPSSKPLAQVFVSCNFCGKSISYSCSSVPHQGRGFSQYGVSGSPTKSKVTSCPGCRKPLPRCALCLINMGTPVSSCP 800 
WD40-rpts                                                                                      

Query      801 GGSKSDEKVDLSKDKKLAQFNNWFTWCHNCRHGGHAGHMLSWFRDHAECPVSACTCKCMQLDTTGNLVPAETVQP 875 
WD40-rpts                                                                                 

3 WD40-repeats found in QUERY=ENSMUSP00000039301 (Len=875):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7    92-146      3.56  261.91  0.01825       22.5%     36.70
  WD 2:  Seg 13   213-252      6.25  372.71  0.00059       20.0%     42.43
  WD 3:  Seg 17   257-297      3.13  243.87  0.03173       20.0%     47.07

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   92-146    LGQDHNSKFKDLIGKEFVPKHARQCNTLAWNP-LDSNWLAAGLDKHRADFSVLIWD
   WD 2  213-252    LRN----------TSQKMFVNTKAVQGVTVDP--YFHDRVAS----FYEGQVAIWD
   WD 3  257-297    -EK----------PVLTLTEQPKPLTKVAWCPTRTGLLATLT----RDSNIIRLYD

   WD40 Template    TGE----------CLRTLSGHTSGVTSVSFSP--DGKRLVSG----SEDGTIKVWD