Input parameters:

  Query = ENSMUSP00000038098 (Len=1282)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (ENSMUSP00000038098, Len=1282):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDWDKDGDILAVIAEKSSCIYLWDANTNKTSQLDNGMRDQMSFLLWSKIGSFLAVGTIKGNLLIYNHQTSRKIPVLGKHT 80  
WD40-rpts                                 (_________________WD 1________________)   (__________

Query       81 KKITCGCWNSENLLALGGEDKMITVSNQEGDTIRQTPVKSEPSDIKFSMSKTDERISSAENTISAVVGKKMLFLFHLNEP 160 
WD40-rpts      ______WD 2________________)(_________________WD 3_________________)             

Query      161 DNPVDLEFQQAYGNIVCYSWYGDGYIMIGFSRGTFLAISTHFPEVGQEIFKARDHKDNLTSVALSQTLNKAATCGDNCIK 240 
WD40-rpts                                                   (_________________WD 4_____________

Query      241 IHDLTELRDMYAIINLDDENKGLGTLSWTDDGQLLALSTQRGSLHVFLTKLPILGDACHTRIAYLTSLLEVTVANLIEGE 320 
WD40-rpts      ___)     (_________________WD 5________________)                                

Query      321 PPITVSVDVEPTFVAVGLYHLAVGMNNRAWFYVLGENVVKKLKDVEYLGTVASICLHSDYAAALFEGKIQLHLIENEMLD 400 
WD40-rpts                                                                                      

Query      401 AQEERETRLFPAVDDKCRILCHALTSDFLIYGTDTGIIHYFFIEDWQFVNDYRHPVGVKKLFPDPNGTRLVFIDEKSDGF 480 
WD40-rpts                                                 (_________________WD 6_______________

Query      481 VYCPVNDATYEIPDFSPTIKGVLWENWPMDKGVFIAYDDDKVYTYAFHKDTIQGSKVILAGSTKLPFSHKPLLLYNGELT 560 
WD40-rpts      __)                                                                             

Query      561 CQTQSGKINSIYLSTHSFLGSMKDTEPTDLRQMLTQTLLLKRFSDAWDICKMLNDRTSWSELAKACLHHMEVEFAIRVSR 640 
WD40-rpts                                                                                      

Query      641 TMGDVGTVMSLEQIKGIEDYNLLAGHLAMFTNDFNLAQDLYLASNCPVAALEMRRDLQHWDSALQLAKRLAPDQIPFISK 720 
WD40-rpts                                                                                      

Query      721 EYAIQLEFTGDYVNALAHYEKGITGDNKEHDEVCLAGVAQMSIRMGDIRRGANQALKHPSRVLKRDCGAILENMKQFSEA 800 
WD40-rpts                                                                                      

Query      801 AQLYEKGQYYDRAASVYIRCKNWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENAKQWNSVIRIYLDHLNNPE 880 
WD40-rpts                                                                                      

Query      881 KAVSIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVLSKCNNEAFTLAQQHNKMEIYADIIGAEDTTNEDYQSIALYFEG 960 
WD40-rpts                                                                                      

Query      961 EKRHFQAGKFFLLCGQYSRALKHFLKCPSSEDNVAIEMAIETVGQAKDELLTNQLIDHLMGESDGMPKDAKYLFRLYMAL 1040
WD40-rpts                                                                                      

Query     1041 KQYREAARTAIIIAREEQSAGNYRNAHDVLFSMYAELKAQKIKIPSEMATNLMILHSYILVKIHVKSGDHMKGARMLIRV 1120
WD40-rpts                                                                                      

Query     1121 ANNISKFPSHIVPILTSTVIECHRAGLKNSAFSFAAMLMRPEYRNKIDAKYKKKIEAMVRRPDTSETEEATTPCPFCQFL 1200
WD40-rpts                                                                                      

Query     1201 LPECELLCPGCKNNIPYCIATGRHMLKDDWTMCPHCGFPALYSEFKILLNSESTCPMCSERLNSSQLKKITDCSQYLRTE 1280
WD40-rpts                                                                                      

Query     1281 ME 1282
WD40-rpts        

6 WD40-repeats found in QUERY=ENSMUSP00000038098 (Len=1282):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    28-66       5.33  334.73  0.00192       15.0%     53.16
  WD 2:  Seg  7    70-107      4.44  297.92  0.00600       25.0%     51.60
  WD 3:  Seg 11   108-147      4.07  282.85  0.00956       15.0%     42.88
  WD 4:  Seg 20   206-244      2.80  230.25  0.04802       15.0%     55.83
  WD 5:  Seg 24   250-288      5.28  332.58  0.00205       20.0%     58.00
  WD 6:  Seg 41   444-483      4.21  288.38  0.00806       25.0%     50.15

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-66     -NKTSQLDNGMRDQMSFLLWSKIGSFLAVGTIKGNLLIYN
   WD 2   70-107    -SRKIPVLGKHTKKITCGCWNSEN-LLALGGEDKMITVSN
   WD 3  108-147    QEGDTIRQTPVKSEPSDIKFSMSKTDERISSAENTISAVV
   WD 4  206-244    -GQEIFKARDHKDNLTSVALSQTLNKAATCGDNCIKIHDL
   WD 5  250-288    -MYAIINLDDENKGLGTLSWTDDGQLLALSTQRGSLHVFL
   WD 6  444-483    EDWQFVNDYRHPVGVKKLFPDPNGTRLVFIDEKSDGFVYC

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD